RegulonDB RegulonDB 10.8: Gene Form
   

ypdE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fryA fryC ypdF ypdE fryAp6 fryAp6

Gene      
Name: ypdE    Texpresso search in the literature
Synonym(s): ECK2380, G7247, b2384
Genome position(nucleotides): 2504510 <-- 2505547 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 58.29
External database links:  
ASAP:
 ABE-0007864
ECHOBASE:
 EB3904
OU-MICROARRAY:
 b2384
PortEco:
 ypdE
STRING:
 511145.b2384
COLOMBOS: ypdE


Product      
Name: aminopeptidase YpdE
Synonym(s): YpdE, broad-specificity exoaminopeptidase
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 37.409
Isoelectric point: 4.991
Motif(s):
 
Type Positions Sequence
43 -> 325 GSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVMGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQADMFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQL

 
Classification:
Multifun Terms (GenProtEC)  
  1 - metabolism --> 1.2 - degradation of macromolecules --> 1.2.3 - proteins/peptides/glycopeptides
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0008233 - peptidase activity
GO:0016787 - hydrolase activity
GO:0046872 - metal ion binding
GO:0004177 - aminopeptidase activity
GO:0008237 - metallopeptidase activity
GO:0070006 - metalloaminopeptidase activity
biological_process GO:0006508 - proteolysis
Note(s): Note(s): ...[more].
External database links:  
DIP:
 DIP-48263N
ECOCYC:
 G7247-MONOMER
ECOLIWIKI:
 b2384
INTERPRO:
 IPR023367
INTERPRO:
 IPR008007
MODBASE:
 P77585
PFAM:
 PF05343
PRIDE:
 P77585
REFSEQ:
 NP_416885
SMR:
 P77585
SWISSMODEL:
 P77585
UNIPROT:
 P77585


Operon      
Name: fryBC-ypdFE-fryA         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter fryAp6 2504493 reverse Similarity to the consensus
Read more > 		[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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