RegulonDB RegulonDB 11.1: Gene Form
   

ECK120003922 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

bamD raiA unknown raiZ CRP TSS_2938 (cluster) TSS_2938 (cluster) TSS_2937 TSS_2937 TSS_2936 (cluster) TSS_2936 (cluster) TSS_2935 TSS_2935 TSS_2934 (cluster) TSS_2934 (cluster) TSS_2933 TSS_2933 TSS_2932 TSS_2932 TSS_2931 (cluster) TSS_2931 (cluster) raiAp raiAp TSS_2930 TSS_2930 TSS_2929 TSS_2929 TSS_2928 TSS_2928 TSS_2927 TSS_2927 TSS_2926 TSS_2926 TSS_2925 TSS_2925 TSS_2924 TSS_2924 TSS_2923 TSS_2923 TSS_2922 TSS_2922 TSS_2921 (cluster) TSS_2921 (cluster) TSS_2920 (cluster) TSS_2920 (cluster) TSS_2919 TSS_2919 TSS_2918 TSS_2918

Gene      
Synonym(s): G7353, b2596
Type: Phantom Gene
Genome position(nucleotides): 2736913 --> 2737119
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 36.23
External database links:  
ECOLIHUB:
 G7353
OU-MICROARRAY:
 b2596


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2918 2736248 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2919 2736286 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2920 (cluster) 2736329 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2921 (cluster) 2736345 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2922 2736549 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2923 2736555 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2924 2736559 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2925 2736561 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2926 2736565 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2927 2736586 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2928 2736612 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2929 2736658 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2930 2737089 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2931 (cluster) 2737123 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2932 2737131 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2933 2737251 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2934 (cluster) 2737256 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2935 2737260 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2936 (cluster) 2737373 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2937 2737381 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2938 (cluster) 2737413 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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