RegulonDB RegulonDB 10.9: Gene Form
   

yfjV gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfjW yfjV yfjU yfjWp5 yfjWp5

Gene      
Name: yfjV    Texpresso search in the literature
Synonym(s): ECK2635, ECK2636, ECK2637, G7376, b2639, b2640, b2641, ypjL, ypjM
Type: Pseudo Gene
Genome position(nucleotides): 2772167 <-- 2773182 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.82
Note(s): ypjM_1, ypjM_2 and ypjM_3 are fragments of a predicted pseudogene in E. coli K-12. They show homology to the C-terminal portion of the arsB arsenate transporter.
Expression of ypjL (ypjM_3) was reduced by autoclaved stationary-phase supernatant Ren D,2004.
External database links:  
ASAP:
ABE-0285126
ASAP:
ABE-0008687
ASAP:
ABE-0008690
ASAP:
ABE-0008692
ECHOBASE:
EB4355
ECHOBASE:
EB4354
ECHOBASE:
EB3000
ECOLIHUB:
ypjM_1
ECOLIHUB:
ypjM_2
ECOLIHUB:
ypjM_3
OU-MICROARRAY:
b2641
OU-MICROARRAY:
b2640
OU-MICROARRAY:
b2639
STRING:
316407.85675502
COLOMBOS: yfjV


Product      
Name: CP4-57 prophage; putative arsenite transporter
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 11.93
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12087N
ECOCYC:
G7376-MONOMER
ECOLIWIKI:
b2641
INTERPRO:
IPR000802
PFAM:
PF02040
PRINTS:
PR00758
REFSEQ:
NP_417128


Operon      
Name: yfjV         
Operon arrangement:
Transcription unit        Promoter
yfjV


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfjWp5 2773285 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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