RegulonDB RegulonDB 11.1: Gene Form
   

ygcN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ygcN ygcP queD ygcO terminator ygcNp3 ygcNp3

Gene      
Name: ygcN    Texpresso search in the literature
Synonym(s): ECK2761, G7432, b2766
Genome position(nucleotides): 2892657 --> 2893928
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 55.35
External database links:  
ASAP:
 ABE-0009070
ECHOBASE:
 EB2922
ECOLIHUB:
 ygcN
OU-MICROARRAY:
 b2766
STRING:
 511145.b2766
COLOMBOS: ygcN


Product      
Name: putative oxidoreductase with FAD/NAD(P)-binding domain
Synonym(s): YgcN
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane,cytosol
Molecular weight: 46.393
Isoelectric point: 6.402
Motif(s):
 
Type Positions Sequence Comment
6 -> 53 DIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHA
7 -> 21 IIIIGAGIAGTACAL UniProt: FAD.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
GO:0005886 - plasma membrane
molecular_function GO:0016491 - oxidoreductase activity
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q46904
ECOCYC:
 G7432-MONOMER
ECOLIWIKI:
 b2766
INTERPRO:
 IPR036188
INTERPRO:
 IPR006076
INTERPRO:
 IPR039651
MODBASE:
 Q46904
PANTHER:
 PTHR43624
PFAM:
 PF01266
PRIDE:
 Q46904
REFSEQ:
 NP_417246
SMR:
 Q46904
UNIPROT:
 Q46904


Operon      
Name: ygcNOP         
Operon arrangement:
Transcription unit        Promoter
ygcNOP


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygcNp3 2892572 forward nd [COMP-AINF] [1]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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