RegulonDB RegulonDB 11.0: Gene Form
   

ygcG gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

eno ygcG yqcG TSS_3069 TSS_3069 TSS_3068 TSS_3068 TSS_3067 TSS_3067 TSS_3066 TSS_3066 TSS_3065 TSS_3065 TSS_3064 (cluster) TSS_3064 (cluster) TSS_3063 TSS_3063 TSS_3062 TSS_3062 TSS_3061 TSS_3061 TSS_3060 TSS_3060 TSS_3059 TSS_3059 TSS_3058 (cluster) TSS_3058 (cluster) TSS_3057 (cluster) TSS_3057 (cluster) TSS_3056 TSS_3056 TSS_3055 TSS_3055 ygcGp6 ygcGp6 queEp7 queEp7 ygcGp7 ygcGp7

Gene      
Name: ygcG    Texpresso search in the literature
Synonym(s): ECK2772, G7444, b2778
Genome position(nucleotides): 2905711 --> 2906583
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 41.12
External database links:  
ASAP:
 ABE-0009108
ECHOBASE:
 EB2850
ECOLIHUB:
 ygcG
OU-MICROARRAY:
 b2778
STRING:
 511145.b2778
COLOMBOS: ygcG


Product      
Name: TPM domain-containing protein YgcG
Synonym(s): YgcG
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 32.206
Isoelectric point: 7.424
Motif(s):
 
Type Positions Sequence Comment
1 -> 16 MRYFILMFTFVCSFVA
17 -> 290 AQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW UniProt: UPF0603 protein YgcG.
29 -> 152 VTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNN
175 -> 195 HYYFAIFWVFAVMFFPFWFFH UniProt: Helical.
206 -> 226 SGVCISAIYLLDLFLFSDKIF UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 P55140
DIP:
 DIP-12123N
ECOCYC:
 G7444-MONOMER
ECOLIWIKI:
 b2778
INTERPRO:
 IPR007621
PFAM:
 PF04536
PRIDE:
 P55140
REFSEQ:
 NP_417258
SMR:
 P55140
UNIPROT:
 P55140


Operon      
Name: ygcG         
Operon arrangement:
Transcription unit        Promoter
ygcG


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ygcGp7 2905605 forward nd [ICWHO] [1]
  promoter queEp7 2905606 reverse nd [ICWHO] [1]
  promoter ygcGp6 2905666 forward nd [ICWHO] [1]
  promoter TSS_3055 2907117 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3056 2907189 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3057 (cluster) 2907196 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3058 (cluster) 2907241 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3059 2907580 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3060 2907627 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3061 2907633 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3062 2907661 forward nd [RS-EPT-CBR] [2]
  promoter TSS_3063 2907662 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3064 (cluster) 2907665 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3065 2907682 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3066 2907694 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3067 2907716 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3068 2907923 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_3069 2907932 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [ICWHO] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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