RegulonDB RegulonDB 10.9: Gene Form
   

ygeK gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

insCD4 insD4 ygeN pbl ygeK ygeO insC4 ygeI ygeL terminator terminator

Gene      
Name: ygeK    Texpresso search in the literature
Synonym(s): ECK2853, G7475, b2855
Type: Pseudo Gene
Genome position(nucleotides): 2994460 <-- 2994903 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
35.59
External database links:  
ASAP:
ABE-0009379
ECHOBASE:
EB2856
ECOLIHUB:
ygeK
OU-MICROARRAY:
b2855
STRING:
316407.85675670
COLOMBOS: ygeK


Product      
Name: putative DNA-binding transcriptional regulator YgeK
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 9.458
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
biological_process GO:0006351 - transcription, DNA-templated
Note(s): Note(s): ...[more].
Evidence: [HIFS] Human inference of function from sequence
Reference(s): [1] Perez-Rueda E., et al., 2000
[2] Perez-Rueda E., et al., 2004
External database links:  
ECOCYC:
G7475-MONOMER
ECOLIWIKI:
b2855
INTERPRO:
IPR001789
INTERPRO:
IPR000792
INTERPRO:
IPR011006
INTERPRO:
IPR016032
INTERPRO:
IPR011991
PFAM:
PF00196
PFAM:
PF00072
PRINTS:
PR00038
PROSITE:
PS50110
PROSITE:
PS50043
PROSITE:
PS00622
REFSEQ:
NP_417332
SMART:
SM00421
UNIPROT:
Q46791


Operon      
Name: ygeLK         
Operon arrangement:
Transcription unit        Promoter
ygeLK


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Perez-Rueda E., Collado-Vides J., 2000, The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12., Nucleic Acids Res 28(8):1838-47

 [2] Perez-Rueda E., Collado-Vides J., Segovia L., 2004, Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea., Comput Biol Chem 28(5-6):341-50


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