RegulonDB RegulonDB 10.10: Gene Form
   

yggR gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yggR yggS yqgF anti-anti-terminator anti-terminator terminator TSS_3279 (cluster) TSS_3279 (cluster) TSS_3278 TSS_3278

Gene      
Name: yggR    Texpresso search in the literature
Synonym(s): ECK2945, G7526, b2950
Genome position(nucleotides): 3094100 <-- 3095080 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.45
External database links:  
ASAP:
ABE-0009675
ECHOBASE:
EB2803
ECOLIHUB:
yggR
OU-MICROARRAY:
b2950
STRING:
511145.b2950
COLOMBOS: yggR


Product      
Name: Type II/IV secretion system family protein
Synonym(s): YggR
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 35.994
Isoelectric point: 6.084
Motif(s):
 
Type Positions Sequence
127 -> 134 GATGSGKS
61 -> 253 LENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQLEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQL

 

Classification:
Multifun Terms (GenProtEC)  
  4 - transport --> 4.9.B - Putative uncharacterized transport protein
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0005515 - protein binding
GO:0000166 - nucleotide binding
GO:0005524 - ATP binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-12193N
ECOCYC:
G7526-MONOMER
ECOLIWIKI:
b2950
INTERPRO:
IPR027417
INTERPRO:
IPR006321
INTERPRO:
IPR001482
INTERPRO:
IPR003593
MODBASE:
P52052
PFAM:
PF00437
PRIDE:
P52052
PROSITE:
PS00662
REFSEQ:
NP_417425
SMART:
SM00382
SMR:
P52052
SWISSMODEL:
P52052
UNIPROT:
P52052


Operon      
Name: yggR         
Operon arrangement:
Transcription unit        Promoter
yggR


RNA cis-regulatory element    
Attenuation: Transcriptional


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3278 3095325 forward nd [RS-EPT-CBR] [1]
  promoter TSS_3279 (cluster) 3095663 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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