RegulonDB RegulonDB 10.8: Gene Form
   

yhbP gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yraR yhbO yhbP yhbQ yhbS terminator anti-terminator anti-anti-terminator anti-anti-terminator anti-terminator terminator yhbQp2 yhbQp2 TSS_3420 TSS_3420 yraRp1 yraRp1 yraRp6 yraRp6 TSS_3419 TSS_3419 yraRp yraRp

Gene      
Name: yhbP    Texpresso search in the literature
Synonym(s): ECK3142, G7648, b3154
Genome position(nucleotides): 3299472 <-- 3299915 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
53.83
External database links:  
ASAP:
ABE-0010363
ECHOBASE:
EB2638
OU-MICROARRAY:
b3154
PortEco:
yhbP
STRING:
511145.b3154
COLOMBOS: yhbP


Product      
Name: putative FMN binding protein YhbP
Synonym(s): YhbP
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 16.776
Isoelectric point: 9.194
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
molecular_function GO:0048037 - cofactor binding
Note(s): Note(s): ...[more].
External database links:  
DIP:
DIP-48097N
ECOCYC:
G7648-MONOMER
ECOLIWIKI:
b3154
INTERPRO:
IPR012349
INTERPRO:
IPR011194
PRIDE:
P67762
REFSEQ:
NP_417623
SMR:
P67762
UNIPROT:
P67762


Operon      
Name: yhbP         
Operon arrangement:
Transcription unit        Promoter
yhbP


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3419 3298912 reverse nd [RS-EPT-CBR] [1]
  promoter yraRp6 3298923 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yraRp1 3299012 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_3420 3299936 reverse nd [RS-EPT-CBR] [1]
  promoter yhbQp2 3299939 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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