Gene
Name:	ubiU
Synonym(s):	ECK3146, G7652, b3158, yhbU
Genome position(nucleotides):	3301485 --> 3302480 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	56.83
External database links:

ASAP:	ABE-0010380
ECHOBASE:	EB2642
OU-MICROARRAY:	b3158
PortEco:	yhbU
STRING:	511145.b3158
COLOMBOS:	ubiU

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	TSS_3421	3300908	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_3422	3300960	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_3423	3300965	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_3424	3300967	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_3425 (cluster)	3301010	reverse	For this promoter, there is a cluster of 2 transcription start sites,in the interval 3301009 to 3301010, where the highest frequency is at position 3299032. The most upstream position of this cluster is assigned as TSS position in the promoter. Read more >	[RS-EPT-CBR]	[2]
promoter	yhbUp7	3301279	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 5.936. P-value: 1.275e-5 Read more >	[ICWHO]	[3]
promoter	TSS_3427	3301317	reverse	nd	[RS-EPT-CBR]	[2]
promoter	yhbUp1	3301329	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: -2.31. P-value: 2.000e-5 Read more >	[ICWHO]	[3]
promoter	yhbUp5	3301437	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.423. P-value: 8.524e-5 Read more >	[ICWHO]	[3]
promoter	TSS_3428	3301439	forward	nd	[RS-EPT-CBR]	[2]

Evidence
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Pelosi L., Vo CD., Abby SS., Loiseau L., Rascalou B., Hajj Chehade M., Faivre B., Gousse M., Chenal C., Touati N., Binet L., Cornu D., Fyfe CD., Fontecave M., Barras F., Lombard M., Pierrel F., 2019, Ubiquinone Biosynthesis over the Entire O₂ Range: Characterization of a Conserved O₂ -Independent Pathway., MBio 10(4)
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.
[3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RNA cis-regulatory element

Attenuation:	Translational