RegulonDB RegulonDB 11.2: Gene Form
   

aaeX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

aaeA aaeR aaeX CRP aaeRp aaeRp aaeRp6 aaeRp6 aaeRp7 aaeRp7 aaeXp aaeXp aaeRp9 aaeRp9 aaeRp10 aaeRp10 aaeBp3 aaeBp3 aaeBp8 aaeBp8 aaeBp7 aaeBp7

Gene      
Name: aaeX    Texpresso search in the literature
Synonym(s): ECK3231, G7687, b3242, yhcR
Genome position(nucleotides): 3389134 <-- 3389337
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 47.55
External database links:  
ASAP:
 ABE-0010636
ECHOBASE:
 EB2675
ECOLIHUB:
 aaeX
OU-MICROARRAY:
 b3242
STRING:
 511145.b3242
COLOMBOS: aaeX


Product      
Name: DUF1656 domain-containing protein AaeX
Synonym(s): AaeX, YhcR
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 7.847
Isoelectric point: 8.214
Motif(s):
 
Type Positions Sequence Comment
3 -> 23 LFPVIVVFGLSFPPIFFELLL UniProt: Helical.
7 -> 61 IVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYL
43 -> 63 FVWHPALFNTALYCCLFYLIS UniProt: Helical.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0016021 - integral component of membrane
Note(s): Note(s): ...[more].
Reference(s): [1] Hancock V., et al., 2007
External database links:  
ALPHAFOLD:
 P46478
ECOCYC:
 G7687-MONOMER
ECOLIWIKI:
 b3242
INTERPRO:
 IPR012451
PFAM:
 PF07869
PRODB:
 PRO_000022024
REFSEQ:
 NP_417709
SMR:
 P46478
UNIPROT:
 P46478


Operon      
Name: aaeXAB         
Operon arrangement:
Transcription unit        Promoter
aaeXAB


Transcriptional Regulation      
Display Regulation             
Activated by: CRP, AaeR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter aaeBp7 3388236 reverse nd [COMP-AINF] [2]
  promoter aaeBp8 3388258 reverse nd [COMP-AINF] [2]
  promoter aaeBp3 3388263 reverse nd [COMP-AINF] [2]
  promoter aaeRp10 3389381 forward nd [COMP-AINF] [2]
  promoter aaeRp9 3389383 forward nd [COMP-AINF] [2]
  promoter aaeRp7 3389461 forward nd [COMP-AINF] [2]
  promoter aaeRp6 3389477 forward nd [COMP-AINF] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Hancock V., Klemm P., 2007, Global gene expression profiling of asymptomatic bacteriuria Escherichia coli during biofilm growth in human urine., Infect Immun 75(2):966-76

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

RegulonDB