RegulonDB

Gene
Name:	ytfB
Synonym(s):	ECK4202, G7864, b4206
Genome position(nucleotides):	4428079 <-- 4428717 Genome Browser
Strand:	reverse
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	55.71
External database links:

ASAP:	ABE-0013756
ECHOBASE:	EB2395
ECOLIHUB:	ytfB
OU-MICROARRAY:	b4206
STRING:	511145.b4206
COLOMBOS:	ytfB

Product

Name:

cell division protein YtfB

Synonym(s):

YtfB

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

extracellular space,inner membrane

Molecular weight:

23.505

Isoelectric point:

4.838

Motif(s):

Type	Positions	Sequence
	117 -> 212	PFQPDSGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR
	127 -> 211	QWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRA
	34 -> 50	GIIIAAIVLVVGFLLPS
	23 -> 50	FMDPLPPMHRRGIIIAAIVLVVGFLLPS

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		5 - cell processes --> 5.1 - cell division
Gene Ontology Terms (GO)
	cellular_component	GO:0016020 - membrane GO:0005886 - plasma membrane GO:0005576 - extracellular region GO:0005887 - integral component of plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0004222 - metalloendopeptidase activity GO:0042834 - peptidoglycan binding
	biological_process	GO:0051301 - cell division GO:0006508 - proteolysis GO:0007049 - cell cycle GO:0043093 - FtsZ-dependent cytokinesis GO:0000920 - septum digestion after cytokinesis

Note(s):

Note(s): ...[more].

External database links:

ECOCYC:

ECOLIWIKI:

INTERPRO:

INTERPRO:

PFAM:

PFAM:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ytfB

Operon arrangement:

Transcription unit	Promoter
ytfB	ytfBp

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	yjfZp8	4427517	reverse	nd	[ICWHO]	[1]
promoter	yjfZp7	4427526	reverse	nd	[ICWHO]	[1]
promoter	TSS_5062	4428742	reverse	nd	[RS-EPT-CBR]	[2]
promoter	TSS_5064	4428908	forward	nd	[RS-EPT-CBR]	[2]

Evidence
[ICWHO] Inferred computationally without human oversight
[RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

Reference(s)
[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78
[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

Reference(s)

[1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

[2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.