RegulonDB RegulonDB 10.9: Gene Form
   

yjjY gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

arcA yjtD yjjY FNR yjtDp6 yjtDp6 yjtDp8 yjtDp8 arcAp7 arcAp7 arcAp6 arcAp6 arcAp5 arcAp5 TSS_5196 TSS_5196 TSS_5195 TSS_5195 arcAp4 arcAp4 arcAp3 arcAp3 TSS_5194 TSS_5194 arcAp2 arcAp2 arcAp1 arcAp1 TSS_5192 TSS_5192 TSS_5191 TSS_5191 TSS_5190 (cluster) TSS_5190 (cluster) yjjYp6 yjjYp6 TSS_5189 TSS_5189 TSS_5188 TSS_5188 TSS_5187 TSS_5187

Gene      
Name: yjjY    Texpresso search in the literature
Synonym(s): ECK4394, G7954, b4402
Genome position(nucleotides): 4640402 --> 4640542 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.55
External database links:  
ASAP:
ABE-0014437
ECHOBASE:
EB2486
ECOLIHUB:
yjjY
OU-MICROARRAY:
b4402
STRING:
511145.b4402
COLOMBOS: yjjY


Product      
Name: uncharacterized protein YjjY
Synonym(s): YjjY
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 4.886
Isoelectric point: 8.536
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
G7954-MONOMER
ECOLIWIKI:
b4402
PRIDE:
P0ADD9
REFSEQ:
NP_418819
UNIPROT:
P0ADD9


Operon      
Name: yjjY         
Operon arrangement:
Transcription unit        Promoter
yjjY


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_5187 4640243 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5188 4640332 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5189 4640338 reverse nd [RS-EPT-CBR] [1]
  promoter yjjYp6 4640358 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_5190 (cluster) 4640420 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_5191 4640424 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5192 4640426 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5194 4640530 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5195 4640660 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_5196 4640680 reverse nd [RS-EPT-CBR] [1]
  promoter yjtDp8 4640838 forward Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter yjtDp6 4640898 forward Similarity to the consensus
Read more >
[ICWHO] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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