RegulonDB

Gene
Name:	ymgF
Synonym(s):	ECK1156, G0-10261, b4520
Genome position(nucleotides):	1218983 --> 1219201 Genome Browser
Strand:	forward
Sequence:	Get nucleotide sequence FastaFormat
GC content %:	40.18
External database links:

ASAP:	ABE-0285041
ECHOBASE:	EB4087
ECOLIHUB:	ymgF
STRING:	511145.b4520
COLOMBOS:	ymgF

Product

Name:

inner membrane protein YmgF

Synonym(s):

YmgF, inner membrane protein that interacts with cell division proteins

Sequence:

Get amino acid sequence Fasta Format

Cellular location:

inner membrane

Molecular weight:

8.255

Isoelectric point:

9.151

Motif(s):

Classification:

Multifun Terms (GenProtEC)
Multifun Terms (GenProtEC)		5 - cell processes --> 5.1 - cell division
Gene Ontology Terms (GO)
	cellular_component	GO:0000935 - division septum GO:0016020 - membrane GO:0005886 - plasma membrane GO:0016021 - integral component of membrane
	molecular_function	GO:0005515 - protein binding
	biological_process	GO:0051301 - cell division GO:0007049 - cell cycle

Note(s):

Note(s): ...[more].

Evidence:

[IGI] Inferred from genetic interaction
[IPI] Inferred from physical interaction

Reference(s):

External database links:

DIP:

ECOCYC:

ECOLIWIKI:

PRIDE:

REFSEQ:

UNIPROT:

Operon

Name:

ymgF

Operon arrangement:

Transcription unit	Promoter
ymgF

Elements in the selected gene context region unrelated to any object in RegulonDB

Type	Name	Post Left	Strand	Notes	Evidence (Confirmed, Strong, Weak)	References
promoter	ymgFp1	1218814	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: poor homology. Score: 1.0. P-value: 5.197e-7 Read more >	[ICWHO]	[5]
promoter	ymgFp7	1218937	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: good homology. Score: 3.39. P-value: 9.516e-5 Read more >	[ICWHO]	[5]
promoter	ymgFp11	1218940	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.788. P-value: 2.646e-5 Read more >	[ICWHO]	[5]
promoter	ymgFp10	1218953	forward	Similarity to the consensus sequence of the set of known functional promoters for this sigma factor with strong experimental evidence: high homology. Score: 4.294. P-value: 1.033e-5 Read more >	[ICWHO]	[5]

Evidence
[ICWHO] Inferred computationally without human oversight

Reference(s)
[1] Karimova G., Dautin N., Ladant D., 2005, Interaction network among Escherichia coli membrane proteins involved in cell division as revealed by bacterial two-hybrid analysis., J Bacteriol 187(7):2233-43
[2] Karimova G., Davi M., Ladant D., 2012, The β-lactam resistance protein Blr, a small membrane polypeptide, is a component of the Escherichia coli cell division machinery., J Bacteriol 194(20):5576-88
[3] Karimova G., Robichon C., Ladant D., 2009, Characterization of YmgF, a 72-residue inner membrane protein that associates with the Escherichia coli cell division machinery., J Bacteriol 191(1):333-46
[4] Lies M., Visser BJ., Joshi MC., Magnan D., Bates D., 2015, MioC and GidA proteins promote cell division in E. coli., Front Microbiol 6:516
[5] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78