RegulonDB RegulonDB 10.9: Gene Form
   

insX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yagB insA2 insAB2 insX insI2 insB2 TSS_469 TSS_469 TSS_468 TSS_468 TSS_467 (cluster) TSS_467 (cluster)

Gene      
Name: insX    Texpresso search in the literature
Synonym(s): ECK0266, ECK4473, G0-10433, b4505, ykgN
Type: Pseudo Gene
Genome position(nucleotides): 280114 <-- 280362 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
46.99
Note(s): Note and comment from ASAP:
C-terminal deletion of 28 nucleotides by an IS30 element (ASAP:ABE-0000910) relative to Shigella flexneri 2457T (ASAP:ABQ-0072810)
The coordinates of insX have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the region of similarity to Shigella flexneri 2457T (ASAP:ABQ-0072810), removing 88 nucleotides from the C-terminus.
External database links:  
ASAP:
ABE-0285026
ECHOBASE:
EB4385
ECOLIHUB:
ykgN
ECOLIWIKI:
b4505
STRING:
316407.4902998
UNIPROT:
Q79E92
COLOMBOS: insX


Operon      
Name: yagAB-insX         
Operon arrangement:
Transcription unit        Promoter
yagAB-insX


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_467 (cluster) 279709 forward For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_468 279891 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_469 279893 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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