RegulonDB RegulonDB 11.1: Gene Form
   

ykgO gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ykgM ykgL ykgO ykgR Zur ykgMp ykgMp

Gene      
Name: ykgO    Texpresso search in the literature
Synonym(s): ECK0295, G0-10434, b4506
Genome position(nucleotides): 312374 <-- 312514
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 41.84
External database links:  
ASAP:
 ABE-0285027
ECHOBASE:
 EB4386
ECOLIHUB:
 ykgO
STRING:
 511145.b4506
COLOMBOS: ykgO


Product      
Name: 50S ribosomal subunit protein L36B
Synonym(s): YkgO
Sequence: Get amino acid sequence Fasta Format
Cellular location: ribosome
Molecular weight: 5.467
Isoelectric point: 11.974
Motif(s):
 
Type Positions Sequence Comment
1 -> 41 MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQG

 
Classification:
Multifun Terms (GenProtEC)  
  2 - information transfer --> 2.3 - protein related --> 2.3.8 - ribosomal proteins
Gene Ontology Terms (GO)  
cellular_component GO:0005840 - ribosome
GO:0022626 - cytosolic ribosome
molecular_function GO:0003735 - structural constituent of ribosome
biological_process GO:0006412 - translation
Note(s): Note(s): ...[more].
Evidence: [EXP-IDA] Inferred from direct assay
Reference(s): [1] Lilleorg S., et al., 2019
External database links:  
ALPHAFOLD:
 Q2EEQ2
ECOCYC:
 MONOMER0-2656
ECOLIWIKI:
 b4506
INTERPRO:
 IPR000473
INTERPRO:
 IPR035977
PDB:
 6I7V
PFAM:
 PF00444
PRIDE:
 Q2EEQ2
PROSITE:
 PS00828
REFSEQ:
 YP_588437
SMR:
 Q2EEQ2
UNIPROT:
 Q2EEQ2


Operon      
Name: ykgMO         
Operon arrangement:
Transcription unit        Promoter
ykgMO


Transcriptional Regulation      
Display Regulation             
Repressed by: Zur


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Lilleorg S., Reier K., Pulk A., Liiv A., Tammsalu T., Peil L., Cate JHD., Remme J., 2019, Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase., Biochimie 156:169-180

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