RegulonDB RegulonDB 10.8: Gene Form
   

ymdF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rutG wrbA ycdF ymdF CsgD CsgD CsgD wrbAp wrbAp

Gene      
Name: ymdF    Texpresso search in the literature
Synonym(s): ECK0996, G0-10443, b4518
Genome position(nucleotides): 1068081 --> 1068254 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
51.15
External database links:  
ASAP:
ABE-0285039
ECHOBASE:
EB4104
PortEco:
ymdF
STRING:
511145.b4518
COLOMBOS: ymdF


Product      
Name: stress-induced bacterial acidophilic repeat motifs-containing protein YmdF
Synonym(s): YmdF
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 5.883
Isoelectric point: 10.657
Motif(s):
 
Type Positions Sequence
10 -> 30 NFAEDRERASEAGKKGGQHSG
32 -> 52 NFKNDPQRASEAGKKGGKSSH

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Oguri T., et al., 2018
External database links:  
DIP:
DIP-28074N
ECOCYC:
MONOMER0-2665
ECOLIWIKI:
b4518
INTERPRO:
IPR019626
PFAM:
PF10685
PRIDE:
P56614
REFSEQ:
NP_415525
UNIPROT:
P56614


Operon      
Name: ymdF         
Operon arrangement:
Transcription unit        Promoter
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Oguri T., Kwon Y., Woo JKK., Prehna G., Ning M., Won KJ., Lee J., Mei S., Shi Y., Jeong H., Lee H., 2018, A family of small intrinsically disordered proteins involved in flagella-dependent motility in Salmonella., J Bacteriol


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