RegulonDB RegulonDB 11.1: Gene Form
   

ymdF gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

rutG wrbA ycdF ymdF CsgD CsgD CsgD wrbAp wrbAp

Gene      
Name: ymdF    Texpresso search in the literature
Synonym(s): ECK0996, G0-10443, b4518
Genome position(nucleotides): 1068081 --> 1068254
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 51.15
External database links:  
ASAP:
 ABE-0285039
ECHOBASE:
 EB4104
ECOLIHUB:
 ymdF
STRING:
 511145.b4518
COLOMBOS: ymdF


Product      
Name: stress-induced bacterial acidophilic repeat motifs-containing protein YmdF
Synonym(s): YmdF
Sequence: Get amino acid sequence Fasta Format
Cellular location: cytosol
Molecular weight: 5.883
Isoelectric point: 10.657
Motif(s):
 
Type Positions Sequence Comment
1 -> 57 MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN UniProt: Disordered; Sequence Annotation Type: region of interest.
9 -> 23 GNFAEDRERASEAGK UniProt: Basic and acidic residues; Sequence Annotation Type: compositionally biased region.
10 -> 30 NFAEDRERASEAGKKGGQHSG
32 -> 52 NFKNDPQRASEAGKKGGKSSH
39 -> 57 RASEAGKKGGKSSHGKSDN UniProt: Basic and acidic residues; Sequence Annotation Type: compositionally biased region.

 
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
Note(s): Note(s): ...[more].
Reference(s): [1] Oguri T., et al., 2018
External database links:  
ALPHAFOLD:
 P56614
ECOCYC:
 MONOMER0-2665
ECOLIWIKI:
 b4518
INTERPRO:
 IPR019626
PFAM:
 PF10685
PRIDE:
 P56614
REFSEQ:
 NP_415525
UNIPROT:
 P56614


Operon      
Name: ymdF         
Operon arrangement:
Transcription unit        Promoter
ymdF


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References


Reference(s)    

 [1] Oguri T., Kwon Y., Woo JKK., Prehna G., Ning M., Won KJ., Lee J., Mei S., Shi Y., Jeong H., Lee H., 2018, A family of small intrinsically disordered proteins involved in flagella-dependent motility in Salmonella., J Bacteriol


RegulonDB