RegulonDB RegulonDB 10.9: Gene Form
   

ycgI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ycgI minE ymgJ terminator TSS_1501 TSS_1501

Gene      
Name: ycgI    Texpresso search in the literature
Synonym(s): ECK1160, ECK1161, G0-10444, b1173, b4521, ymgH
Type: Pseudo Gene
Genome position(nucleotides): 1223564 --> 1223907 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 50.29
Note(s): Comment from ASAP: The coordinates of the ycgI pseudogene have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the region of similarity to its paralog (ASAP:ABE-0008713), adding 131 nucleotides to the N-terminus.
External database links:  
ASAP:
 ABE-0285042
ASAP:
 ABE-0003933
ECHOBASE:
 EB3649
ECHOBASE:
 EB4391
ECOLIHUB:
 ymgH
ECOLIHUB:
 ycgI
ECOLIWIKI:
 b1173
OU-MICROARRAY:
 b1173
UNIPROT:
 P76000
COLOMBOS: ycgI


Product      
Name: protein YcgI
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 11.038
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0019867 - outer membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-2666
ECOLIWIKI:
 b4521
INTERPRO:
 IPR005546
INTERPRO:
 IPR036709
INTERPRO:
 IPR006315
INTERPRO:
 IPR003991
PFAM:
 PF03797
PRIDE:
 P76000
PRINTS:
 PR01484
REFSEQ:
 YP_588448
UNIPROT:
 P76000


Operon      
Name: ycgI         
Operon arrangement:
Transcription unit        Promoter
ycgI


RNA cis-regulatory element    
Attenuation: Translational


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1501 1223746 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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