RegulonDB RegulonDB 10.9: Gene Form
   

yicS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

nepI nlpA yicS CsgD CsgD nlpAp nlpAp TSS_4247 TSS_4247

Gene      
Name: yicS    Texpresso search in the literature
Synonym(s): ECK3652, G0-10469, b4555
Genome position(nucleotides): 3840215 --> 3840508 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
42.86
External database links:  
ASAP:
ABE-0285076
ECHOBASE:
EB4407
ECOLIHUB:
yicS
STRING:
511145.b4555
COLOMBOS: yicS


Product      
Name: uncharacterized protein YicS
Synonym(s): YicS
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 11.07
Isoelectric point: 4.8
Motif(s):
 
Type Positions Sequence
2 -> 22 KPTTLLLIFTFFAMPGIVYAE

 

Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005887 - integral component of plasma membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2691
ECOLIWIKI:
b4555
PRIDE:
Q2M7X4
REFSEQ:
YP_588471
UNIPROT:
Q2M7X4


Operon      
Name: yicS         
Operon arrangement:
Transcription unit        Promoter
yicS


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4247 3840008 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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