RegulonDB RegulonDB 10.9: Gene Form
   

uof gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

fldA fur chiQ uof OxyR SoxS OxyR CRP Fur Fur TSS_821 TSS_821 uofp uofp TSS_820 TSS_820 furpb furpb furpa furpa TSS_817 TSS_817 TSS_816 TSS_816 TSS_815 TSS_815 TSS_814 TSS_814 TSS_813 TSS_813

Gene      
Name: uof    Texpresso search in the literature
Synonym(s): ECK4461, G0-10580, b4637
Genome position(nucleotides): 710639 <-- 710725 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
40.23
External database links:  
ECOLIHUB:
uof
STRING:
511145.b4637
COLOMBOS: uof


Product      
Name: RyhB-regulated fur leader peptide
Synonym(s): Uof
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 3.109
Isoelectric point: 10.306
Classification:
Multifun Terms (GenProtEC)  
  3 - regulation --> 3.1 - type of regulation --> 3.1.3 - posttranscriptional
Gene Ontology Terms (GO)  
biological_process GO:0006417 - regulation of translation
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Vecerek B., et al., 2007
External database links:  
ECOCYC:
MONOMER0-2801
ECOLIWIKI:
b4637
PRIDE:
A8DYP9
PRODB:
PRO_000024184
REFSEQ:
YP_001491546
UNIPROT:
A8DYP9


Operon      
Name: fldA-uof-fur         
Operon arrangement:
Transcription unit        Promoter
fur
fur
uof-fur
fldA-uof-fur


Transcriptional Regulation      
Display Regulation             
Activated by: SoxS, OxyR


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_813 710473 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_814 710482 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_815 710700 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_816 710711 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_817 710713 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_820 710828 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_821 711001 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Vecerek B., Moll I., Blasi U., 2007, Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding., EMBO J 26(4):965-75

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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