RegulonDB RegulonDB 11.1: Gene Form
   

ylcH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybcM ybcN ninE ylcH ybcO terminator ybcNp5 ybcNp5 ybcNp6 ybcNp6 TSS_683 TSS_683

Gene      
Name: ylcH    Texpresso search in the literature
Synonym(s): ECK4398, G0-10584, b4588
Genome position(nucleotides): 572368 --> 572469
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 49.02
External database links:  
ECOLIHUB:
 ylcH
STRING:
 511145.b4588
COLOMBOS: ylcH


Product      
Name: DLP12 prophage; uncharacterized protein YlcH
Synonym(s): YlcH
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 3.644
Isoelectric point: 7.176
Classification:
Multifun Terms (GenProtEC)  
  8 - extrachromosomal --> 8.1 - prophage genes and phage related functions
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 Q47268
ECOCYC:
 MONOMER0-2813
ECOLIWIKI:
 b4588
PRIDE:
 Q47268
REFSEQ:
 YP_001165308
UNIPROT:
 Q47268


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_683 571937 forward nd [RS-EPT-CBR] [1]
  promoter ybcNp6 572314 forward nd [COMP-AINF] [2]
  promoter ybcNp5 572319 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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