RegulonDB RegulonDB 10.8: Gene Form
   

cydH gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ydhP purR cydH ydhB PurR PurR Fur terminator purRp purRp TSS_1946 TSS_1946 TSS_1945 TSS_1945 TSS_1944 TSS_1944

Gene      
Name: cydH    Texpresso search in the literature
Synonym(s): ECK4411, G0-10594, b4602, ynhF
Genome position(nucleotides): 1737456 <-- 1737545 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
External database links:  
ASAP:
ABE-0285185
PortEco:
ynhF
STRING:
511145.b4602
COLOMBOS: cydH


Product      
Name: cytochrome bd-I ubiquinol oxidase accessory subunit CydH
Synonym(s): CydH, CydY, YnhF
Sequence: Get amino acid sequence Fasta Format
Cellular location: inner membrane
Molecular weight: 2.998
Isoelectric point: 7.556
Motif(s):
 
Type Positions Sequence
3 -> 28 TDLKFSLVTTIIVLGLIVAVGLTAAL

 

Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes --> 5.5 - adaptations --> 5.5.6 - other (mechanical, nutritional, oxidative stress)
  6 - cell structure --> 6.1 - membrane
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
GO:0005886 - plasma membrane
GO:0005887 - integral component of plasma membrane
GO:0016021 - integral component of membrane
GO:0070069 - cytochrome complex
molecular_function GO:0005515 - protein binding
biological_process GO:0071456 - cellular response to hypoxia
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2822
ECOLIWIKI:
b4602
PRIDE:
A5A618
REFSEQ:
YP_001165321
UNIPROT:
A5A618


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_1944 1737577 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1945 1737583 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_1946 1737585 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


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