RegulonDB RegulonDB 11.1: Gene Form
   

ilvX gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ilvG ilvM ilvL ilvX Lrp Lrp Lrp IHF TSS_4392 TSS_4392 ilvEp3 ilvEp3 TSS_4390 TSS_4390 TSS_4389 TSS_4389 TSS_4388 TSS_4388 TSS_4387 TSS_4387 TSS_4386 TSS_4386 TSS_4385 TSS_4385 TSS_4384 TSS_4384 TSS_4383 TSS_4383 TSS_4382 (cluster) TSS_4382 (cluster) TSS_4381 TSS_4381 TSS_4380 (cluster) TSS_4380 (cluster) TSS_4379 TSS_4379 TSS_4378 TSS_4378 TSS_4377 (cluster) TSS_4377 (cluster) TSS_4376 (cluster) TSS_4376 (cluster) TSS_4375 TSS_4375 TSS_4374 TSS_4374 TSS_4373 TSS_4373

Gene      
Name: ilvX    Texpresso search in the literature
Synonym(s): ECK4484, G0-10641, b4669
Genome position(nucleotides): 3950507 --> 3950557
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 37.25
External database links:  
ASAP:
 ABE-0285213
ECOLIHUB:
 ilvX
STRING:
 511145.b4669
COLOMBOS: ilvX


Product      
Name: uncharacterized protein IlvX
Synonym(s): IlvX
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 1.91
Isoelectric point: 11.477
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ALPHAFOLD:
 C1P619
ECOCYC:
 MONOMER0-2868
PRIDE:
 C1P619
REFSEQ:
 YP_002791259
UNIPROT:
 C1P619


Operon      
Name: ilvLXGMEDA         
Operon arrangement:
Transcription unit        Promoter
ilvL
ilvLXG_1G_2MEDA
ilvL
ilvLXG_1G_2MEDA
ilvEDA
ilvA


Transcriptional Regulation      
Display Regulation             
Activated by: IHF
Repressed by: IHF, Lrp


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4373 3950322 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4374 3950325 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4375 3950477 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4376 (cluster) 3950479 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4377 (cluster) 3950482 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4378 3950485 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4379 3950487 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4380 (cluster) 3950489 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4381 3950511 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4382 (cluster) 3950539 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4383 3950564 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4384 3950727 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4385 3950822 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4386 3950842 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4387 3950850 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4388 3950867 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4389 3950982 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4390 3951887 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4392 3952390 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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