RegulonDB RegulonDB 10.8: Gene Form
   

yrbN gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

deaD mtr nlpI yrbN TyrR TyrR TrpR TrpR anti-anti-terminator anti-terminator terminator TSS_3438 TSS_3438 TSS_3437 TSS_3437 TSS_3436 TSS_3436 yrbNp yrbNp TSS_3435 TSS_3435 deaDp1 deaDp1 TSS_3434 TSS_3434 TSS_3433 TSS_3433 TSS_3432 TSS_3432 mtrp1 mtrp1 mtrp2 mtrp2

Gene      
Name: yrbN    Texpresso search in the literature
Synonym(s): ECK4500, G0-10651, b4685
Genome position(nucleotides): 3307853 <-- 3307933 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
39.51
External database links:  
ASAP:
ABE-0285228
PortEco:
yrbN
STRING:
511145.b4685
COLOMBOS: yrbN


Product      
Name: uncharacterized protein YrbN
Synonym(s): YrbN
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 2.979
Isoelectric point: 6.211
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-2878
PRIDE:
C1P618
REFSEQ:
YP_002791258
UNIPROT:
C1P618


Operon      
Name: yrbN-deaD         
Operon arrangement:
Transcription unit        Promoter
yrbN-deaD
 


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_3432 3307002 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3433 3307564 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3434 3307652 reverse nd [RS-EPT-CBR] [1]
  promoter deaDp1 3307909 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_3435 3308055 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3436 3308214 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3437 3308694 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_3438 3308871 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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