RegulonDB RegulonDB 11.1: Gene Form
   

ECK125135299 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

bcr yejG unknown TSS_2478 TSS_2478 TSS_2477 TSS_2477 yejGp8 yejGp8 yejGp2 yejGp2 yejGp5 yejGp5 yejGp1 yejGp1

Gene      
Synonym(s): G0-10700
Type: Phantom Gene
Genome position(nucleotides): 2278258 <-- 2278498
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 36.93
Note(s): This small RNA was identified by RNA-Seq Raghavan R,2011.


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yejGp5 2278353 reverse nd [COMP-AINF] [1]
  promoter yejGp8 2278446 reverse nd [COMP-AINF] [1]
  promoter TSS_2477 2278466 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2478 2279068 reverse nd [RS-EPT-CBR] [2]


Evidence    

 [COMP-AINF] Inferred computationally without human oversight

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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