RegulonDB RegulonDB 10.9: Gene Form
   

ECK125135307 gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

corA yigE unknown ysgD TSS_4478 TSS_4478 corAp corAp TSS_4477 TSS_4477 TSS_4476 TSS_4476

Gene      
Synonym(s): G0-10704
Type: Phantom Gene
Genome position(nucleotides): 4001191 --> 4001334 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
50.0
Note(s): This small RNA was identified by RNA-Seq Raghavan R,2011.


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_4476 4001066 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4477 4001192 forward nd [RS-EPT-CBR] [1]
  promoter TSS_4478 4001273 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.


RegulonDB