RegulonDB RegulonDB 10.9: Gene Form
   

ypjI gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfjW yfjX ypjI yfjXp2 yfjXp2

Gene      
Name: ypjI    Texpresso search in the literature
Synonym(s): ECK4438, G0-16653, b4644
Type: Pseudo Gene
Genome position(nucleotides): 2775545 --> 2775816 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
55.15
Note(s): Comment for pseudogene reconstruction in EcoGene: UPF0401 family. In frame stop codons 8 and 11 were translated as Xs. A frameshift at codon 60 was hypothetically corrected in the protein sequence. Comment from ASAP: Contains multiple frameshift and point mutations relative to a paralog, ykfF.
External database links:  
ASAP:
ABE-0285241
UNIPROT:
P58095
COLOMBOS: ypjI


Product      
Name: putative UPF0401 protein YpjI
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 4.838
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
External database links:  
ECOCYC:
G0-16653-MONOMER
UNIPROT:
P58095


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter yfjXp2 2775888 forward Similarity to the consensus
Read more >
[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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