RegulonDB RegulonDB 10.10: Gene Form

yoeD gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

yoeF yeeX yeeW yoeD cbtA terminator anti-terminator anti-anti-terminator TSS_2312 TSS_2312

Name: yoeD    Texpresso search in the literature
Synonym(s): ECK4443, G0-16655, b4642
Type: Pseudo Gene
Genome position(nucleotides): 2078549 <-- 2078677 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
Note(s): Comment from EcoGene: Pseudogene, CP4-44 putative defective prophage; C-terminal fragment of a putative transposase. An example of an intact allele is Z4340 of strain O157:H7.
Expression of yoeD displayed significantly lower variability across populations adapted to different toxins Erickson KE, Otoupal PB, Chatterjee A,2017.
External database links:  

Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2312 2079341 reverse nd [RS-EPT-CBR] [1]


 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.