RegulonDB RegulonDB 10.9: Gene Form
   

yicT gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

setC yicT selC anti-terminator anti-anti-terminator terminator setCp12 setCp12 setCp13 setCp13 setCp10 setCp10 setCp14 setCp14 yicJp yicJp

Gene      
Name: yicT    Texpresso search in the literature
Synonym(s): ECK4456, G0-16669, b4653, erhM, rhuM
Type: Pseudo Gene
Genome position(nucleotides): 3836425 --> 3836556 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
54.55
Note(s): Comment in EcoGene: Intact alleles of YicT have been called RhuM (Q1R4S5) and ErhM (Q1AP19). Orthologous to Salmonella virulence island SPI-3 gene rhuM. yicT also has small internal deletions.


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter setCp14 3836744 forward Similarity to the consensus
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[ICWHO] [1]
  promoter setCp10 3836768 forward Similarity to the consensus
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[ICWHO] [1]
  promoter setCp13 3836838 forward Similarity to the consensus
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[ICWHO] [1]
  promoter setCp12 3836877 forward Similarity to the consensus
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[ICWHO] [1]


Evidence    

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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