RegulonDB RegulonDB 10.8: Gene Form

sokE gene in Escherichia coli K-12 genome

Gene local context to scale (view description)

ybdK hokE sokE LexA hokEp hokEp ybdKp3 ybdKp3 ybdJp3 ybdJp3 ybdJp2 ybdJp2

Name: sokE    Texpresso search in the literature
Synonym(s): ECK4512, G0-16677, b4700
Genome position(nucleotides): 607734 --> 607792 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  

Name: SokE
Synonym(s): small RNA SokE
Type: small RNA
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
Evidence: [IDA] Inferred from direct assay
Reference(s): [1] Fernandez De Henestrosa AR., et al., 2000
[2] Kawano M., et al., 2005
External database links:  

Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter ybdJp2 606405 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter ybdJp3 606411 reverse Similarity to the consensus
Read more >
[ICWHO] [3]
  promoter ybdKp3 607561 reverse Similarity to the consensus
Read more >
[ICWHO] [3]


 [ICWHO] Inferred computationally without human oversight


 [1] Fernandez De Henestrosa AR., Ogi T., Aoyagi S., Chafin D., Hayes JJ., Ohmori H., Woodgate R., 2000, Identification of additional genes belonging to the LexA regulon in Escherichia coli., Mol Microbiol 35(6):1560-72

 [2] Kawano M., Reynolds AA., Miranda-Rios J., Storz G., 2005, Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli., Nucleic Acids Res 33(3):1040-50

 [3] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78