RegulonDB RegulonDB 11.1: Gene Form
   

aaaD gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

ybcY tfaD nohD aaaD ylcI TSS_686 TSS_686

Gene      
Name: aaaD    Texpresso search in the literature
Synonym(s): ECK4439, G0-16718, b4634, ylcF
Type: Pseudo Gene
Genome position(nucleotides): 581354 --> 581662
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 53.07
External database links:  
ASAP:
 ABE-0285235
COLOMBOS: aaaD


Product      
Name: DLP12 prophage; protein AaaD
Sequence: Get amino acid sequence Fasta Format
Isoelectric point: 10.072
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0005829 - cytosol
External database links:  
ECOCYC:
 G0-16718-MONOMER


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_686 582219 reverse nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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