RegulonDB RegulonDB 10.10: Gene Form
   

yodE gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

yfdI yfdK tfaS ryeG yodE yfdH terminator anti-terminator anti-anti-terminator TSS_2661 TSS_2661 TSS_2660 TSS_2660 TSS_2659 (cluster) TSS_2659 (cluster) TSS_2658 TSS_2658

Gene      
Name: yodE    Texpresso search in the literature
Synonym(s): ECK4637, G0-17026, b4780
Genome position(nucleotides): 2470497 <-- 2470643 Genome Browser
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 37.41
External database links:  
ASAP:
 ABE-0285738
COLOMBOS: yodE


Product      
Name: CPS-53 (KpLE1) prophage; toxic protein YodE
Synonym(s): YodE
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 5.068
Isoelectric point: 4.698
Classification:
Multifun Terms (GenProtEC)  
  5 - cell processes
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
biological_process GO:0030308 - negative regulation of cell growth
Note(s): Note(s): ...[more].
Evidence: [IMP] Inferred from mutant phenotype
Reference(s): [1] Hor J., et al., 2020
External database links:  
ECOCYC:
 MONOMER0-4492
UNIPROT:
 P0DSF8


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2658 2470649 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2659 (cluster) 2470665 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2660 2470691 reverse nd [RS-EPT-CBR] [2]
  promoter TSS_2661 2470748 forward nd [RS-EPT-CBR] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates


Reference(s)    

 [1] Hor J., Di Giorgio S., Gerovac M., Venturini E., Forstner KU., Vogel J., 2020, Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli., Nucleic Acids Res 48(16):9301-9319

 [2] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

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