RegulonDB RegulonDB 11.1: Gene Form
   

yoaM gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

nrdA nrdB yfaE yoaM yfaEp1 yfaEp1 yfaEp2 yfaEp2 TSS_2515 TSS_2515 TSS_2514 TSS_2514 TSS_2513 TSS_2513 TSS_2512 TSS_2512 TSS_2511 TSS_2511 TSS_2510 TSS_2510

Gene      
Name: yoaM    Texpresso search in the literature
Synonym(s): ECK4636, G0-17025, b4779
Genome position(nucleotides): 2347350 <-- 2347385
Strand: reverse
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
 44.44


Product      
Name: protein YoaM
Synonym(s): YoaM
Sequence: Get amino acid sequence Fasta Format
Cellular location: membrane
Molecular weight: 1.23
Isoelectric point: 3.846
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
cellular_component GO:0016020 - membrane
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
 MONOMER0-4491
UNIPROT:
 P0DSF7


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2510 2344875 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2511 2345253 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2512 2345987 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2513 2346007 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2514 2347352 forward nd [RS-EPT-CBR] [1]
  promoter TSS_2515 2347642 forward nd [RS-EPT-CBR] [1]
  promoter yfaEp2 2348338 forward nd [COMP-AINF] [2]
  promoter yfaEp1 2348341 forward nd [COMP-AINF] [2]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [COMP-AINF] Inferred computationally without human oversight


Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78

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