RegulonDB RegulonDB 10.9: Gene Form
   

yfiS gene in Escherichia coli K-12 genome


Gene local context to scale (view description)

kgtP rrfG yfiS yfiM TSS_2901 TSS_2901 kgtPp8 kgtPp8 kgtPp6 kgtPp6 kgtPp7 kgtPp7 TSS_2900 TSS_2900 TSS_2899 TSS_2899 TSS_2898 (cluster) TSS_2898 (cluster)

Gene      
Name: yfiS    Texpresso search in the literature
Synonym(s): ECK4639, G0-17029, b4783
Genome position(nucleotides): 2725925 --> 2725987 Genome Browser
Strand: forward
Sequence: Get nucleotide sequence FastaFormat
GC content %:  
49.21


Product      
Name: protein YfiS
Synonym(s): YfiS
Sequence: Get amino acid sequence Fasta Format
Molecular weight: 2.162
Isoelectric point: 9.121
Classification:
Multifun Terms (GenProtEC)  
Gene Ontology Terms (GO)  
Note(s): Note(s): ...[more].
External database links:  
ECOCYC:
MONOMER0-4495
UNIPROT:
P0DSG1


Elements in the selected gene context region unrelated to any object in RegulonDB      

  Type Name Post Left Post Right Strand Notes Evidence (Confirmed, Strong, Weak) References
  promoter TSS_2898 (cluster) 2724586 reverse For this promoter, there
Read more >
[RS-EPT-CBR] [1]
  promoter TSS_2899 2724730 reverse nd [RS-EPT-CBR] [1]
  promoter TSS_2900 2725342 reverse nd [RS-EPT-CBR] [1]
  promoter kgtPp7 2725760 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter kgtPp6 2725809 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter kgtPp8 2725812 reverse Similarity to the consensus
Read more >
[ICWHO] [2]
  promoter TSS_2901 2725834 forward nd [RS-EPT-CBR] [1]


Evidence    

 [RS-EPT-CBR] RNA-seq using two enrichment strategies for primary transcripts and consistent biological replicates

 [ICWHO] Inferred computationally without human oversight



Reference(s)    

 [1] Salgado H, Peralta-Gil M, Gama-Castro S, Santos-Zavaleta A, Muñiz-Rascado L, García-Sotelo JS, Weiss V, Solano-Lira H, Martínez-Flores I, Medina-Rivera A, Salgado-Osorio G, Alquicira-Hernández S, Alquicira-Hernández K, López-Fuentes A, Porrón-Sotelo L, Huerta AM, Bonavides-Martínez C, Balderas-Martínez YI, Pannier L, Olvera M, Labastida A, Jiménez-Jacinto V, Vega-Alvarado L, Del Moral-Chávez V, Hernández-Alvarez A, Morett E, Collado-Vides J., 2012, RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more., Nucleic Acids Res.

 [2] Huerta AM., Collado-Vides J., 2003, Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals., J Mol Biol 333(2):261-78


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