RegulonDB RegulonDB

YiaJ Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
YiaN xylulose YiaN 3-keto-L-gulonate 6-P YiaK SgbE yiaKLMNO-lyxK-sgbHUE_mRNA 2,3-dioxo-L-gulonate LyxK Sodium_Ext YiaL ribulose-5-P Sodium This Gensor Unit is not yet available YiaJ YiaO SgbU xylulose 5P CO2 YiaM YiaM xylulose-P This Gensor Unit is not yet available YiaO 2,3-dioxo-L-gulonate_Ext 3-keto-L-gulonate yiaKLMNO-lyxK-sgbHUE SgbH


Gensor Unit       
Name: YiaJ
Classification:
Groups: Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Gene Ontology Terms (GO): biological_process GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006281 - DNA repair
GO:0019572 - L-arabinose catabolic process
GO:0019324 - L-lyxose metabolic process
GO:0016052 - carbohydrate catabolic process
GO:0005975 - carbohydrate metabolic process
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cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
GO:0005886 - plasma membrane
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molecular_function GO:0047559 - 3-dehydro-L-gulonate 2-dehydrogenase activity
GO:0033982 - 3-dehydro-L-gulonate-6-phosphate decarboxylase activity
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0034015 - L-ribulose-5-phosphate 3-epimerase activity
GO:0008742 - L-ribulose-phosphate 4-epimerase activity
Read more >
Components:
  Function Name Type
  simple_molecule 2,3-dioxo-L-gulonate simple_molecule
  simple_molecule 2,3-dioxo-L-gulonate_Ext simple_molecule
  simple_molecule 3-keto-L-gulonate simple_molecule
  simple_molecule 3-keto-L-gulonate 6-P simple_molecule
  simple_molecule CO2 simple_molecule
  protein LyxK protein
  protein SgbE protein
  protein SgbH protein
  protein SgbU protein
  simple_molecule Sodium simple_molecule
  simple_molecule Sodium_Ext simple_molecule
  protein YiaJ protein
  protein YiaK protein
  protein YiaL protein
  protein YiaM protein
  protein YiaN protein
  protein YiaO protein
  complex YiaO-YiaN-YiaM complex
  simple_molecule ribulose-5-P simple_molecule
  simple_molecule xylulose simple_molecule
  simple_molecule xylulose 5P simple_molecule
  simple_molecule xylulose-P simple_molecule
  gene yiaJ gene
  RNA yiaJ_mRNA RNA
  gene yiaKLMNO-lyxK-sgbHUE gene
  RNA yiaKLMNO-lyxK-sgbHUE_mRNA RNA


Reactions       
Showing 20 reactions
YiaJ yiaJ yiaJ_mRNA
Name: yiaJ -> yiaJ_mRNA
Description: Transcription of transcription unit yiaJ. Reaction inhibition by YiaJ.
Type: transcription
Pathway Components: yiaJ - YiaJ -> yiaJ_mRNA
Components:
Function Name Type
inhibitor YiaJ protein
reactant yiaJ gene
product yiaJ_mRNA RNA
YiaJ yiaKLMNO-lyxK-sgbHUE yiaKLMNO-lyxK-sgbHUE_mRNA
Name: yiaKLMNO-lyxK-sgbHUE -> yiaKLMNO-lyxK-sgbHUE_mRNA
Description: Transcription of transcription unit yiaKLMNO-lyxK-sgbHUE. Reaction inhibition by YiaJ.
Type: transcription
Pathway Components: yiaKLMNO-lyxK-sgbHUE - YiaJ -> yiaKLMNO-lyxK-sgbHUE_mRNA
Components:
Function Name Type
inhibitor YiaJ protein
reactant yiaKLMNO-lyxK-sgbHUE gene
product yiaKLMNO-lyxK-sgbHUE_mRNA RNA
yiaJ_mRNA YiaJ
Name: yiaJ_mRNA -> YiaJ
Description: Translation of YiaJ
Type: translation
Pathway Components: yiaJ_mRNA -> YiaJ
Components:
Function Name Type
product YiaJ protein
reactant yiaJ_mRNA RNA
yiaKLMNO-lyxK-sgbHUE_mRNA YiaK
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaK
Description: Translation of YiaK
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaK
Components:
Function Name Type
product YiaK protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
YiaK 2,3-dioxo-L-gulonate 3-keto-L-gulonate
Name: 2,3-dioxo-L-gulonate -> 3-keto-L-gulonate
Description: Reaction transforming 2,3-dioxo-L-gulonate into 3-keto-L-gulonate
Type: state transition
Pathway Components: 2,3-dioxo-L-gulonate - YiaK -> 3-keto-L-gulonate
Components:
Function Name Type
reactant 2,3-dioxo-L-gulonate simple_molecule
product 3-keto-L-gulonate simple_molecule
catalyzer YiaK protein
yiaKLMNO-lyxK-sgbHUE_mRNA YiaL
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaL
Description: Translation of YiaL
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaL
Components:
Function Name Type
product YiaL protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
yiaKLMNO-lyxK-sgbHUE_mRNA YiaM
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaM
Description: Translation of YiaM
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaM
Components:
Function Name Type
product YiaM protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
YiaN + YiaM + YiaO YiaO-YiaN-YiaM
Name: YiaN + YiaM + YiaO -> YiaO-YiaN-YiaM
Description: Reaction transforming YiaN, YiaM, YiaO into YiaO-YiaN-YiaM
Type: state transition
Pathway Components: YiaN + YiaM + YiaO -> YiaO-YiaN-YiaM
Components:
Function Name Type
reactant YiaM protein
reactant YiaN protein
reactant YiaO protein
product YiaO-YiaN-YiaM complex
YiaO-YiaN-YiaM 2,3-dioxo-L-gulonate_Ext + Sodium_Ext 2,3-dioxo-L-gulonate + Sodium
Name: 2,3-dioxo-L-gulonate_Ext + Sodium_Ext -> 2,3-dioxo-L-gulonate + Sodium
Description: Transport of 2,3-dioxo-L-gulonate_Ext, Sodium_Ext through a bacterial membrane, leading to the presence of 2,3-dioxo-L-gulonate, Sodium inside the cell.
Type: transport
Pathway Components: 2,3-dioxo-L-gulonate_Ext + Sodium_Ext - YiaO-YiaN-YiaM -> 2,3-dioxo-L-gulonate + Sodium
Components:
Function Name Type
product 2,3-dioxo-L-gulonate simple_molecule
reactant 2,3-dioxo-L-gulonate_Ext simple_molecule
product Sodium simple_molecule
reactant Sodium_Ext simple_molecule
catalyzer YiaO-YiaN-YiaM complex
yiaKLMNO-lyxK-sgbHUE_mRNA YiaN
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaN
Description: Translation of YiaN
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaN
Components:
Function Name Type
product YiaN protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
yiaKLMNO-lyxK-sgbHUE_mRNA YiaO
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaO
Description: Translation of YiaO
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> YiaO
Components:
Function Name Type
product YiaO protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
yiaKLMNO-lyxK-sgbHUE_mRNA LyxK
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> LyxK
Description: Translation of LyxK
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> LyxK
Components:
Function Name Type
product LyxK protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
LyxK xylulose xylulose 5P
Name: xylulose -> xylulose 5P
Description: Reaction transforming xylulose into xylulose 5P
Type: state transition
Pathway Components: xylulose - LyxK -> xylulose 5P
Components:
Function Name Type
catalyzer LyxK protein
reactant xylulose simple_molecule
product xylulose 5P simple_molecule
LyxK 3-keto-L-gulonate 3-keto-L-gulonate 6-P
Name: 3-keto-L-gulonate -> 3-keto-L-gulonate 6-P
Description: Reaction transforming 3-keto-L-gulonate into 3-keto-L-gulonate 6-P
Type: state transition
Pathway Components: 3-keto-L-gulonate - LyxK -> 3-keto-L-gulonate 6-P
Components:
Function Name Type
reactant 3-keto-L-gulonate simple_molecule
product 3-keto-L-gulonate 6-P simple_molecule
catalyzer LyxK protein
yiaKLMNO-lyxK-sgbHUE_mRNA SgbH
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbH
Description: Translation of SgbH
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbH
Components:
Function Name Type
product SgbH protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
SgbH 3-keto-L-gulonate 6-P xylulose 5P + CO2
Name: 3-keto-L-gulonate 6-P -> xylulose 5P + CO2
Description: Reaction transforming 3-keto-L-gulonate 6-P into xylulose 5P, CO2
Type: state transition
Pathway Components: 3-keto-L-gulonate 6-P - SgbH -> xylulose 5P + CO2
Components:
Function Name Type
reactant 3-keto-L-gulonate 6-P simple_molecule
product CO2 simple_molecule
catalyzer SgbH protein
product xylulose 5P simple_molecule
yiaKLMNO-lyxK-sgbHUE_mRNA SgbU
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbU
Description: Translation of SgbU
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbU
Components:
Function Name Type
product SgbU protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
SgbU xylulose 5P ribulose-5-P
Name: xylulose 5P -> ribulose-5-P
Description: Reaction transforming xylulose 5P into ribulose-5-P
Type: state transition
Pathway Components: xylulose 5P - SgbU -> ribulose-5-P
Components:
Function Name Type
catalyzer SgbU protein
product ribulose-5-P simple_molecule
reactant xylulose 5P simple_molecule
yiaKLMNO-lyxK-sgbHUE_mRNA SgbE
Name: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbE
Description: Translation of SgbE
Type: translation
Pathway Components: yiaKLMNO-lyxK-sgbHUE_mRNA -> SgbE
Components:
Function Name Type
product SgbE protein
reactant yiaKLMNO-lyxK-sgbHUE_mRNA RNA
SgbE ribulose-5-P xylulose-P
Name: ribulose-5-P -> xylulose-P
Description: Reaction transforming ribulose-5-P into xylulose-P
Type: state transition
Pathway Components: ribulose-5-P - SgbE -> xylulose-P
Components:
Function Name Type
catalyzer SgbE protein
reactant ribulose-5-P simple_molecule
product xylulose-P simple_molecule



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