RegulonDB

Name:

gadEF -> gadEF_mRNA

Description:

Transcription of transcription unit gadEF. Reaction activation by YdeO.

Type:

transcription

Pathway Components:

gadEF - YdeO -> gadEF_mRNA

Components:

Function	Name	Type
activator	YdeO	protein
reactant	gadEF	gene
product	gadEF_mRNA	RNA

Name:

gadEF-mdtEF -> gadEF-mdtEF_mRNA

Description:

Transcription of transcription unit gadEF-mdtEF. Reaction activation by YdeO.

Type:

transcription

Pathway Components:

gadEF-mdtEF - YdeO -> gadEF-mdtEF_mRNA

Components:

Function	Name	Type
activator	YdeO	protein
reactant	gadEF-mdtEF	gene
product	gadEF-mdtEF_mRNA	RNA

Name:

gadW -> gadW_mRNA

Description:

Transcription of transcription unit gadW. Reaction activation by YdeO.

Type:

transcription

Pathway Components:

gadW - YdeO -> gadW_mRNA

Components:

Function	Name	Type
activator	YdeO	protein
reactant	gadW	gene
product	gadW_mRNA	RNA

Name:

hyaABCDEF -> hyaABCDEF_mRNA

Description:

Transcription of transcription unit hyaABCDEF. Reaction activation by YdeO.

Type:

transcription

Pathway Components:

hyaABCDEF - YdeO -> hyaABCDEF_mRNA

Components:

Function	Name	Type
activator	YdeO	protein
reactant	hyaABCDEF	gene
product	hyaABCDEF_mRNA	RNA

Name:

slp-dctR -> slp-dctR_mRNA

Description:

Transcription of transcription unit slp-dctR. Reaction activation by YdeO.

Type:

transcription

Pathway Components:

slp-dctR - YdeO -> slp-dctR_mRNA

Components:

Function	Name	Type
activator	YdeO	protein
reactant	slp-dctR	gene
product	slp-dctR_mRNA	RNA

Name:

yiiS-uspD -> yiiS-uspD_mRNA

Description:

Transcription of transcription unit yiiS-uspD. Reaction activation by YdeO.

Type:

transcription

Pathway Components:

yiiS-uspD - YdeO -> yiiS-uspD_mRNA

Components:

Function	Name	Type
activator	YdeO	protein
reactant	yiiS-uspD	gene
product	yiiS-uspD_mRNA	RNA

Name:

safA-ydeO -> safA-ydeO_mRNA

Description:

Transcription of transcription unit safA-ydeO. Reaction inhibition by YdeO.

Type:

transcription

Pathway Components:

safA-ydeO - YdeO -> safA-ydeO_mRNA

Components:

Function	Name	Type
inhibitor	YdeO	protein
reactant	safA-ydeO	gene
product	safA-ydeO_mRNA	RNA

Name:

appCBXA_mRNA -> AppC

Description:

Translation of AppC

Type:

translation

Pathway Components:

appCBXA_mRNA -> AppC

Components:

Function	Name	Type
product	AppC	protein
reactant	appCBXA_mRNA	RNA

Name:

AppB + AppC -> AppC-AppB

Description:

Reaction transforming AppB, AppC into AppC-AppB

Type:

state transition

Pathway Components:

AppB + AppC -> AppC-AppB

Components:

Function	Name	Type
reactant	AppB	protein
reactant	AppC	protein
product	AppC-AppB	complex

Name:

ubiquinol_Ext + oxygen_Ext -> ubiquinone

Description:

Transport of ubiquinol_Ext, oxygen_Ext through a bacterial membrane, leading to the presence of ubiquinone inside the cell.

Type:

transport

Pathway Components:

ubiquinol_Ext + oxygen_Ext - AppC-AppB -> ubiquinone

Components:

Function	Name	Type
catalyzer	AppC-AppB	complex
reactant	oxygen_Ext	simple_molecule
reactant	ubiquinol_Ext	simple_molecule
product	ubiquinone	simple_molecule

Name:

appCBXA_mRNA -> AppB

Description:

Translation of AppB

Type:

translation

Pathway Components:

appCBXA_mRNA -> AppB

Components:

Function	Name	Type
product	AppB	protein
reactant	appCBXA_mRNA	RNA

Name:

appCBXA_mRNA -> AppX

Description:

Translation of AppX

Type:

translation

Pathway Components:

appCBXA_mRNA -> AppX

Components:

Function	Name	Type
product	AppX	protein
reactant	appCBXA_mRNA	RNA

Name:

appCBXA_mRNA -> AppA

Description:

Translation of AppA

Type:

translation

Pathway Components:

appCBXA_mRNA -> AppA

Components:

Function	Name	Type
product	AppA	protein
reactant	appCBXA_mRNA	RNA

Name:

guanosine-triphosphate -> guanosine-diphosphate + phosphate

Description:

Reaction transforming guanosine-triphosphate into guanosine-diphosphate, phosphate

Type:

state transition

Pathway Components:

guanosine-triphosphate - AppA - guanosine-diphosphate -> guanosine-diphosphate + phosphate

Components:

Function	Name	Type
catalyzer	AppA	protein
inhibitor	guanosine-diphosphate	simple_molecule
product	guanosine-diphosphate	simple_molecule
reactant	guanosine-triphosphate	simple_molecule
product	phosphate	simple_molecule

Name:

phytate -> I(1,2,3,4,5)P5 + phosphate

Description:

Reaction transforming phytate into I(1,2,3,4,5)P5, phosphate

Type:

state transition

Pathway Components:

phytate - AppA -> I(1,2,3,4,5)P5 + phosphate

Components:

Function	Name	Type
catalyzer	AppA	protein
product	I(1,2,3,4,5)P5	simple_molecule
product	phosphate	simple_molecule
reactant	phytate	simple_molecule

Name:

I(1,2,3,4,5)P5 -> I(2,3,4,5)P4 + phosphate

Description:

Reaction transforming I(1,2,3,4,5)P5 into I(2,3,4,5)P4, phosphate

Type:

state transition

Pathway Components:

I(1,2,3,4,5)P5 - AppA -> I(2,3,4,5)P4 + phosphate

Components:

Function	Name	Type
catalyzer	AppA	protein
reactant	I(1,2,3,4,5)P5	simple_molecule
product	I(2,3,4,5)P4	simple_molecule
product	phosphate	simple_molecule

Name:

I(2,3,4,5)P4 -> I(2,4,5)P3 + phosphate

Description:

Reaction transforming I(2,3,4,5)P4 into I(2,4,5)P3, phosphate

Type:

state transition

Pathway Components:

I(2,3,4,5)P4 - AppA -> I(2,4,5)P3 + phosphate

Components:

Function	Name	Type
catalyzer	AppA	protein
reactant	I(2,3,4,5)P4	simple_molecule
product	I(2,4,5)P3	simple_molecule
product	phosphate	simple_molecule

Name:

I(2,4,5)P3 -> phosphate + I(2,5)P2

Description:

Reaction transforming I(2,4,5)P3 into phosphate, I(2,5)P2

Type:

state transition

Pathway Components:

I(2,4,5)P3 - AppA -> phosphate + I(2,5)P2

Components:

Function	Name	Type
catalyzer	AppA	protein
reactant	I(2,4,5)P3	simple_molecule
product	I(2,5)P2	simple_molecule
product	phosphate	simple_molecule

Name:

I(2,5)P2 -> phosphate + Ins2P

Description:

Reaction transforming I(2,5)P2 into phosphate, Ins2P

Type:

state transition

Pathway Components:

I(2,5)P2 - AppA -> phosphate + Ins2P

Components:

Function	Name	Type
catalyzer	AppA	protein
reactant	I(2,5)P2	simple_molecule
product	Ins2P	simple_molecule
product	phosphate	simple_molecule

Name:

gadEF-mdtEF_mRNA -> GadE

Description:

Translation of GadE

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> GadE

Components:

Function	Name	Type
product	GadE	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

GadE + RcsB -> RcsB-GadE

Description:

Reaction transforming GadE, RcsB into RcsB-GadE

Type:

state transition

Pathway Components:

GadE + RcsB -> RcsB-GadE

Components:

Function	Name	Type
reactant	GadE	protein
reactant	RcsB	protein
product	RcsB-GadE	complex

Name:

gadEF-mdtEF_mRNA -> RNA:GadF

Description:

Translation of RNA:GadF

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> RNA:GadF

Components:

Function	Name	Type
product	RNA:GadF	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

gadEF-mdtEF_mRNA -> MdtE

Description:

Translation of MdtE

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> MdtE

Components:

Function	Name	Type
product	MdtE	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

MdtE + MdtF + TolC -> TolC-MdtE-MdtF

Description:

Reaction transforming MdtE, MdtF, TolC into TolC-MdtE-MdtF

Type:

state transition

Pathway Components:

MdtE + MdtF + TolC -> TolC-MdtE-MdtF

Components:

Function	Name	Type
reactant	MdtE	protein
reactant	MdtF	protein
reactant	TolC	protein
product	TolC-MdtE-MdtF	complex

Name:

drug_Ext -> drug

Description:

Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.

Type:

transport

Pathway Components:

drug_Ext - TolC-MdtE-MdtF -> drug

Components:

Function	Name	Type
catalyzer	TolC-MdtE-MdtF	complex
product	drug	simple_molecule
reactant	drug_Ext	simple_molecule

Name:

gadEF-mdtEF_mRNA -> MdtF

Description:

Translation of MdtF

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> MdtF

Components:

Function	Name	Type
product	MdtF	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

yiiS-uspD_mRNA -> YiiS

Description:

Translation of YiiS

Type:

translation

Pathway Components:

yiiS-uspD_mRNA -> YiiS

Components:

Function	Name	Type
product	YiiS	protein
reactant	yiiS-uspD_mRNA	RNA

Name:

yiiS-uspD_mRNA -> UspD

Description:

Translation of UspD

Type:

translation

Pathway Components:

yiiS-uspD_mRNA -> UspD

Components:

Function	Name	Type
product	UspD	protein
reactant	yiiS-uspD_mRNA	RNA

Name:

slp-dctR_mRNA -> Slp

Description:

Translation of Slp

Type:

translation

Pathway Components:

slp-dctR_mRNA -> Slp

Components:

Function	Name	Type
product	Slp	protein
reactant	slp-dctR_mRNA	RNA

Name:

slp-dctR_mRNA -> DctR

Description:

Translation of DctR

Type:

translation

Pathway Components:

slp-dctR_mRNA -> DctR

Components:

Function	Name	Type
product	DctR	protein
reactant	slp-dctR_mRNA	RNA

Name:

safA-ydeO_mRNA -> SafA

Description:

Translation of SafA

Type:

translation

Pathway Components:

safA-ydeO_mRNA -> SafA

Components:

Function	Name	Type
product	SafA	protein
reactant	safA-ydeO_mRNA	RNA

Name:

safA-ydeO_mRNA -> YdeO

Description:

Translation of YdeO

Type:

translation

Pathway Components:

safA-ydeO_mRNA -> YdeO

Components:

Function	Name	Type
product	YdeO	protein
reactant	safA-ydeO_mRNA	RNA

Name:

gadEF_mRNA -> GadE

Description:

Translation of GadE

Type:

translation

Pathway Components:

gadEF_mRNA -> GadE

Components:

Function	Name	Type
product	GadE	protein
reactant	gadEF_mRNA	RNA

Name:

gadEF_mRNA -> RNA:GadF

Description:

Translation of RNA:GadF

Type:

translation

Pathway Components:

gadEF_mRNA -> RNA:GadF

Components:

Function	Name	Type
product	RNA:GadF	protein
reactant	gadEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaA

Description:

Translation of HyaA

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaA

Components:

Function	Name	Type
product	HyaA	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

HyaC + HyaB + HyaA -> HyaA-HyaB-HyaC

Description:

Reaction transforming HyaC, HyaB, HyaA into HyaA-HyaB-HyaC

Type:

state transition

Pathway Components:

HyaC + HyaB + HyaA -> HyaA-HyaB-HyaC

Components:

Function	Name	Type
reactant	HyaA	protein
product	HyaA-HyaB-HyaC	complex
reactant	HyaB	protein
reactant	HyaC	protein

Name:

hyaABCDEF_mRNA -> HyaB

Description:

Translation of HyaB

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaB

Components:

Function	Name	Type
product	HyaB	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaC

Description:

Translation of HyaC

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaC

Components:

Function	Name	Type
product	HyaC	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaD

Description:

Translation of HyaD

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaD

Components:

Function	Name	Type
product	HyaD	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaE

Description:

Translation of HyaE

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaE

Components:

Function	Name	Type
product	HyaE	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaF

Description:

Translation of HyaF

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaF

Components:

Function	Name	Type
product	HyaF	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

gadW_mRNA -> GadW

Description:

Translation of GadW

Type:

translation

Pathway Components:

gadW_mRNA -> GadW

Components:

Function	Name	Type
product	GadW	protein
reactant	gadW_mRNA	RNA

Gensor Unit Map