RegulonDB RegulonDB

SlyA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
PaaI crRNA leuO_mRNA CasE GspF PaaF GspC PaaH cleaved type IV prepilin FecA GspH RpoB GspJ RpoC Cas1 CasD GspM homoprotocatechuate CasE PaaE paaABCDEFGHIJK_mRNA GspH GspD diphosphate PaaG PaaD peptide CasA GspJ 3-oxoadipyl-CoA 3,4-dihydroxyphenylacetyl-CoA PaaB GspE phenylacetate GspI GspL GspK Cas1 oxygen CasC GspL GspO acetyl-CoA PaaE FecA PaaG FecR leuO RpoA GspI type IV prepilin PaaA casABCDE12 PaaF fecIR Cas2 RpoC PaaC GspG coenzyme A PaaC paaABCDEFGHIJK 2,3-didehydroadipyl-CoA oxepin-CoA RpoB suc-coa fecIR_mRNA pre-crRNA SlyA HlyE CasC LeuO FecI hlyE_mRNA FecR 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA PaaB GspM RpoA GspC 3-oxo-5,6-didehydrosuberyl-CoA GspO gspCDEFGHIJKLMO GspG phenylacetyl-CoA PaaA CasA FecI GspE CasB gspCDEFGHIJKLMO_mRNA GspF Cas2 hlyE GspK CasD CasB 3-hydroxyadipyl-CoA GspD PaaK PaaJ casABCDE12_mRNA


Gensor Unit       
Name: SlyA
Classification:
Groups: Function unknown
Gene Ontology Terms (GO): biological_process GO:0019619 - 3,4-dihydroxybenzoate catabolic process
GO:0006281 - DNA repair
GO:0006352 - DNA-templated transcription, initiation
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006396 - RNA processing
GO:0006974 - cellular response to DNA damage stimulus
Read more >
cellular_component GO:0009276 - Gram-negative-bacterium-type cell wall
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0005576 - extracellular region
GO:0033644 - host cell membrane
GO:0020002 - host cell plasma membrane
Read more >
molecular_function GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0003857 - 3-hydroxyacyl-CoA dehydrogenase activity
GO:0008691 - 3-hydroxybutyryl-CoA dehydrogenase activity
GO:0033812 - 3-oxoadipyl-CoA thiolase activity
GO:0017108 - 5'-flap endonuclease activity
GO:0005524 - ATP binding
GO:0016289 - CoA hydrolase activity
Read more >
Components:
  Function Name Type
  simple_molecule 2,3-didehydroadipyl-CoA simple_molecule
  simple_molecule 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA simple_molecule
  simple_molecule 3,4-dihydroxyphenylacetyl-CoA simple_molecule
  simple_molecule 3-hydroxyadipyl-CoA simple_molecule
  simple_molecule 3-oxo-5,6-didehydrosuberyl-CoA simple_molecule
  simple_molecule 3-oxoadipyl-CoA simple_molecule
  protein Cas1 protein
  protein Cas2 protein
  complex Cas2-Cas1 complex
  protein CasA protein
  complex CasA-CasB-CasC-CasD-CasE complex
  protein CasB protein
  protein CasC protein
  protein CasD protein
  protein CasE protein
  protein FecA protein
  complex FecA-FecR complex
  protein FecI protein
  protein FecR protein
  protein GspC protein
  complex GspC-GspD-GspE-GspF-GspG-GspH-GspI-GspJ-GspK-GspL-GspM-GspO complex
  protein GspD protein
  protein GspE protein
  protein GspF protein
  protein GspG protein
  protein GspH protein
  protein GspI protein
  protein GspJ protein
  protein GspK protein
  protein GspL protein
  protein GspM protein
  protein GspO protein
  protein HlyE protein
  protein LeuO protein
  protein PaaA protein
  protein PaaB protein
  protein PaaC protein
  protein PaaD protein
  protein PaaE protein
  complex PaaE-PaaA-PaaC-PaaB complex
  protein PaaF protein
  protein PaaG protein
  complex PaaG-PaaF complex
  protein PaaH protein
  protein PaaI protein
  protein PaaJ protein
  protein PaaK protein
  protein RpoA protein
  protein RpoB protein
  complex RpoB-RpoC-RpoA-FecI complex
  protein RpoC protein
  protein SlyA protein
  simple_molecule acetyl-CoA simple_molecule
  gene casABCDE12 gene
  RNA casABCDE12_mRNA RNA
  simple_molecule cleaved type IV prepilin simple_molecule
  simple_molecule coenzyme A simple_molecule
  simple_molecule crRNA simple_molecule
  simple_molecule diphosphate simple_molecule
  gene fecIR gene
  RNA fecIR_mRNA RNA
  gene gspCDEFGHIJKLMO gene
  RNA gspCDEFGHIJKLMO_mRNA RNA
  gene hlyE gene
  RNA hlyE_mRNA RNA
  simple_molecule homoprotocatechuate simple_molecule
  gene leuO gene
  RNA leuO_mRNA RNA
  simple_molecule oxepin-CoA simple_molecule
  simple_molecule oxygen simple_molecule
  gene paaABCDEFGHIJK gene
  RNA paaABCDEFGHIJK_mRNA RNA
  simple_molecule peptide simple_molecule
  simple_molecule phenylacetate simple_molecule
  simple_molecule phenylacetyl-CoA simple_molecule
  simple_molecule pre-crRNA simple_molecule
  simple_molecule suc-coa simple_molecule
  simple_molecule type IV prepilin simple_molecule


Reactions       
Showing 59 reactions
SlyA casABCDE12 casABCDE12_mRNA
Name: casABCDE12 -> casABCDE12_mRNA
Description: Transcription of transcription unit casABCDE12. Reaction activation by SlyA.
Type: transcription
Pathway Components: casABCDE12 - SlyA -> casABCDE12_mRNA
Components:
Function Name Type
activator SlyA protein
reactant casABCDE12 gene
product casABCDE12_mRNA RNA
SlyA gspCDEFGHIJKLMO gspCDEFGHIJKLMO_mRNA
Name: gspCDEFGHIJKLMO -> gspCDEFGHIJKLMO_mRNA
Description: Transcription of transcription unit gspCDEFGHIJKLMO. Reaction activation by SlyA.
Type: transcription
Pathway Components: gspCDEFGHIJKLMO - SlyA -> gspCDEFGHIJKLMO_mRNA
Components:
Function Name Type
activator SlyA protein
reactant gspCDEFGHIJKLMO gene
product gspCDEFGHIJKLMO_mRNA RNA
SlyA hlyE hlyE_mRNA
Name: hlyE -> hlyE_mRNA
Description: Transcription of transcription unit hlyE. Reaction activation by SlyA.
Type: transcription
Pathway Components: hlyE - SlyA -> hlyE_mRNA
Components:
Function Name Type
activator SlyA protein
reactant hlyE gene
product hlyE_mRNA RNA
SlyA leuO leuO_mRNA
Name: leuO -> leuO_mRNA
Description: Transcription of transcription unit leuO. Reaction activation by SlyA.
Type: transcription
Pathway Components: leuO - SlyA -> leuO_mRNA
Components:
Function Name Type
activator SlyA protein
reactant leuO gene
product leuO_mRNA RNA
SlyA paaABCDEFGHIJK paaABCDEFGHIJK_mRNA
Name: paaABCDEFGHIJK -> paaABCDEFGHIJK_mRNA
Description: Transcription of transcription unit paaABCDEFGHIJK. Reaction activation by SlyA.
Type: transcription
Pathway Components: paaABCDEFGHIJK - SlyA -> paaABCDEFGHIJK_mRNA
Components:
Function Name Type
activator SlyA protein
reactant paaABCDEFGHIJK gene
product paaABCDEFGHIJK_mRNA RNA
SlyA fecIR fecIR_mRNA
Name: fecIR -> fecIR_mRNA
Description: Transcription of transcription unit fecIR. Reaction inhibition by SlyA.
Type: transcription
Pathway Components: fecIR - SlyA -> fecIR_mRNA
Components:
Function Name Type
inhibitor SlyA protein
reactant fecIR gene
product fecIR_mRNA RNA
hlyE_mRNA HlyE
Name: hlyE_mRNA -> HlyE
Description: Translation of HlyE
Type: translation
Pathway Components: hlyE_mRNA -> HlyE
Components:
Function Name Type
product HlyE protein
reactant hlyE_mRNA RNA
paaABCDEFGHIJK_mRNA PaaA
Name: paaABCDEFGHIJK_mRNA -> PaaA
Description: Translation of PaaA
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaA
Components:
Function Name Type
product PaaA protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaB + PaaE + PaaC + PaaA PaaE-PaaA-PaaC-PaaB
Name: PaaB + PaaE + PaaC + PaaA -> PaaE-PaaA-PaaC-PaaB
Description: Reaction transforming PaaB, PaaE, PaaC, PaaA into PaaE-PaaA-PaaC-PaaB
Type: state transition
Pathway Components: PaaB + PaaE + PaaC + PaaA -> PaaE-PaaA-PaaC-PaaB
Components:
Function Name Type
reactant PaaA protein
reactant PaaB protein
reactant PaaC protein
reactant PaaE protein
product PaaE-PaaA-PaaC-PaaB complex
PaaE-PaaA-PaaC-PaaB phenylacetyl-CoA + oxygen 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
Name: phenylacetyl-CoA + oxygen -> 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
Description: Reaction transforming phenylacetyl-CoA, oxygen into 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
Type: state transition
Pathway Components: phenylacetyl-CoA + oxygen - PaaE-PaaA-PaaC-PaaB -> 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA
Components:
Function Name Type
product 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA simple_molecule
catalyzer PaaE-PaaA-PaaC-PaaB complex
reactant oxygen simple_molecule
reactant phenylacetyl-CoA simple_molecule
paaABCDEFGHIJK_mRNA PaaB
Name: paaABCDEFGHIJK_mRNA -> PaaB
Description: Translation of PaaB
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaB
Components:
Function Name Type
product PaaB protein
reactant paaABCDEFGHIJK_mRNA RNA
paaABCDEFGHIJK_mRNA PaaC
Name: paaABCDEFGHIJK_mRNA -> PaaC
Description: Translation of PaaC
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaC
Components:
Function Name Type
product PaaC protein
reactant paaABCDEFGHIJK_mRNA RNA
paaABCDEFGHIJK_mRNA PaaD
Name: paaABCDEFGHIJK_mRNA -> PaaD
Description: Translation of PaaD
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaD
Components:
Function Name Type
product PaaD protein
reactant paaABCDEFGHIJK_mRNA RNA
paaABCDEFGHIJK_mRNA PaaE
Name: paaABCDEFGHIJK_mRNA -> PaaE
Description: Translation of PaaE
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaE
Components:
Function Name Type
product PaaE protein
reactant paaABCDEFGHIJK_mRNA RNA
paaABCDEFGHIJK_mRNA PaaF
Name: paaABCDEFGHIJK_mRNA -> PaaF
Description: Translation of PaaF
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaF
Components:
Function Name Type
product PaaF protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaG + PaaF PaaG-PaaF
Name: PaaG + PaaF -> PaaG-PaaF
Description: Reaction transforming PaaG, PaaF into PaaG-PaaF
Type: state transition
Pathway Components: PaaG + PaaF -> PaaG-PaaF
Components:
Function Name Type
reactant PaaF protein
reactant PaaG protein
product PaaG-PaaF complex
PaaF 2,3-didehydroadipyl-CoA 3-hydroxyadipyl-CoA
Name: 2,3-didehydroadipyl-CoA -> 3-hydroxyadipyl-CoA
Description: Reaction transforming 2,3-didehydroadipyl-CoA into 3-hydroxyadipyl-CoA
Type: state transition
Pathway Components: 2,3-didehydroadipyl-CoA - PaaF -> 3-hydroxyadipyl-CoA
Components:
Function Name Type
reactant 2,3-didehydroadipyl-CoA simple_molecule
product 3-hydroxyadipyl-CoA simple_molecule
catalyzer PaaF protein
paaABCDEFGHIJK_mRNA PaaG
Name: paaABCDEFGHIJK_mRNA -> PaaG
Description: Translation of PaaG
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaG
Components:
Function Name Type
product PaaG protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaG 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA oxepin-CoA
Name: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA -> oxepin-CoA
Description: Reaction transforming 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA into oxepin-CoA
Type: state transition
Pathway Components: 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA - PaaG -> oxepin-CoA
Components:
Function Name Type
reactant 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA simple_molecule
catalyzer PaaG protein
product oxepin-CoA simple_molecule
paaABCDEFGHIJK_mRNA PaaH
Name: paaABCDEFGHIJK_mRNA -> PaaH
Description: Translation of PaaH
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaH
Components:
Function Name Type
product PaaH protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaH 3-hydroxyadipyl-CoA 3-oxoadipyl-CoA
Name: 3-hydroxyadipyl-CoA -> 3-oxoadipyl-CoA
Description: Reaction transforming 3-hydroxyadipyl-CoA into 3-oxoadipyl-CoA
Type: state transition
Pathway Components: 3-hydroxyadipyl-CoA - PaaH -> 3-oxoadipyl-CoA
Components:
Function Name Type
reactant 3-hydroxyadipyl-CoA simple_molecule
product 3-oxoadipyl-CoA simple_molecule
catalyzer PaaH protein
paaABCDEFGHIJK_mRNA PaaI
Name: paaABCDEFGHIJK_mRNA -> PaaI
Description: Translation of PaaI
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaI
Components:
Function Name Type
product PaaI protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaI phenylacetyl-CoA phenylacetate + coenzyme A
Name: phenylacetyl-CoA -> phenylacetate + coenzyme A
Description: Reaction transforming phenylacetyl-CoA into phenylacetate, coenzyme A
Type: state transition
Pathway Components: phenylacetyl-CoA - PaaI -> phenylacetate + coenzyme A
Components:
Function Name Type
catalyzer PaaI protein
product coenzyme A simple_molecule
product phenylacetate simple_molecule
reactant phenylacetyl-CoA simple_molecule
PaaI 3,4-dihydroxyphenylacetyl-CoA homoprotocatechuate + coenzyme A
Name: 3,4-dihydroxyphenylacetyl-CoA -> homoprotocatechuate + coenzyme A
Description: Reaction transforming 3,4-dihydroxyphenylacetyl-CoA into homoprotocatechuate, coenzyme A
Type: state transition
Pathway Components: 3,4-dihydroxyphenylacetyl-CoA - PaaI -> homoprotocatechuate + coenzyme A
Components:
Function Name Type
reactant 3,4-dihydroxyphenylacetyl-CoA simple_molecule
catalyzer PaaI protein
product coenzyme A simple_molecule
product homoprotocatechuate simple_molecule
paaABCDEFGHIJK_mRNA PaaJ
Name: paaABCDEFGHIJK_mRNA -> PaaJ
Description: Translation of PaaJ
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaJ
Components:
Function Name Type
product PaaJ protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaJ 3-oxo-5,6-didehydrosuberyl-CoA + coenzyme A 2,3-didehydroadipyl-CoA + acetyl-CoA
Name: 3-oxo-5,6-didehydrosuberyl-CoA + coenzyme A -> 2,3-didehydroadipyl-CoA + acetyl-CoA
Description: Reaction transforming 3-oxo-5,6-didehydrosuberyl-CoA, coenzyme A into 2,3-didehydroadipyl-CoA, acetyl-CoA
Type: state transition
Pathway Components: 3-oxo-5,6-didehydrosuberyl-CoA + coenzyme A - PaaJ -> 2,3-didehydroadipyl-CoA + acetyl-CoA
Components:
Function Name Type
product 2,3-didehydroadipyl-CoA simple_molecule
reactant 3-oxo-5,6-didehydrosuberyl-CoA simple_molecule
catalyzer PaaJ protein
product acetyl-CoA simple_molecule
reactant coenzyme A simple_molecule
PaaJ 3-oxoadipyl-CoA + coenzyme A acetyl-CoA + suc-coa
Name: 3-oxoadipyl-CoA + coenzyme A -> acetyl-CoA + suc-coa
Description: Reaction transforming 3-oxoadipyl-CoA, coenzyme A into acetyl-CoA, suc-coa
Type: state transition
Pathway Components: 3-oxoadipyl-CoA + coenzyme A - PaaJ -> acetyl-CoA + suc-coa
Components:
Function Name Type
reactant 3-oxoadipyl-CoA simple_molecule
catalyzer PaaJ protein
product acetyl-CoA simple_molecule
reactant coenzyme A simple_molecule
product suc-coa simple_molecule
paaABCDEFGHIJK_mRNA PaaK
Name: paaABCDEFGHIJK_mRNA -> PaaK
Description: Translation of PaaK
Type: translation
Pathway Components: paaABCDEFGHIJK_mRNA -> PaaK
Components:
Function Name Type
product PaaK protein
reactant paaABCDEFGHIJK_mRNA RNA
PaaK phenylacetate + coenzyme A phenylacetyl-CoA + diphosphate
Name: phenylacetate + coenzyme A -> phenylacetyl-CoA + diphosphate
Description: Reaction transforming phenylacetate, coenzyme A into phenylacetyl-CoA, diphosphate
Type: state transition
Pathway Components: phenylacetate + coenzyme A - PaaK -> phenylacetyl-CoA + diphosphate
Components:
Function Name Type
catalyzer PaaK protein
reactant coenzyme A simple_molecule
product diphosphate simple_molecule
reactant phenylacetate simple_molecule
product phenylacetyl-CoA simple_molecule
leuO_mRNA LeuO
Name: leuO_mRNA -> LeuO
Description: Translation of LeuO
Type: translation
Pathway Components: leuO_mRNA -> LeuO
Components:
Function Name Type
product LeuO protein
reactant leuO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspC
Name: gspCDEFGHIJKLMO_mRNA -> GspC
Description: Translation of GspC
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspC
Components:
Function Name Type
product GspC protein
reactant gspCDEFGHIJKLMO_mRNA RNA
Protein Monomers Protein complex
Name: GspH + GspJ + GspF + GspE + GspK + GspD + GspO + GspI + GspL + GspC + GspM + GspG -> GspC-GspD-GspE-GspF-GspG-GspH-GspI-GspJ-GspK-GspL-GspM-GspO
Description: Reaction transforming GspH, GspJ, GspF, GspE, GspK, GspD, GspO, GspI, GspL, GspC, GspM, GspG into GspC-GspD-GspE-GspF-GspG-GspH-GspI-GspJ-GspK-GspL-GspM-GspO
Type: state transition
Pathway Components: GspH + GspJ + GspF + GspE + GspK + GspD + GspO + GspI + GspL + GspC + GspM + GspG -> GspC-GspD-GspE-GspF-GspG-GspH-GspI-GspJ-GspK-GspL-GspM-GspO
Components: Show/Hide Components Table
gspCDEFGHIJKLMO_mRNA GspD
Name: gspCDEFGHIJKLMO_mRNA -> GspD
Description: Translation of GspD
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspD
Components:
Function Name Type
product GspD protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspE
Name: gspCDEFGHIJKLMO_mRNA -> GspE
Description: Translation of GspE
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspE
Components:
Function Name Type
product GspE protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspF
Name: gspCDEFGHIJKLMO_mRNA -> GspF
Description: Translation of GspF
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspF
Components:
Function Name Type
product GspF protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspG
Name: gspCDEFGHIJKLMO_mRNA -> GspG
Description: Translation of GspG
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspG
Components:
Function Name Type
product GspG protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspH
Name: gspCDEFGHIJKLMO_mRNA -> GspH
Description: Translation of GspH
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspH
Components:
Function Name Type
product GspH protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspI
Name: gspCDEFGHIJKLMO_mRNA -> GspI
Description: Translation of GspI
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspI
Components:
Function Name Type
product GspI protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspJ
Name: gspCDEFGHIJKLMO_mRNA -> GspJ
Description: Translation of GspJ
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspJ
Components:
Function Name Type
product GspJ protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspK
Name: gspCDEFGHIJKLMO_mRNA -> GspK
Description: Translation of GspK
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspK
Components:
Function Name Type
product GspK protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspL
Name: gspCDEFGHIJKLMO_mRNA -> GspL
Description: Translation of GspL
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspL
Components:
Function Name Type
product GspL protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspM
Name: gspCDEFGHIJKLMO_mRNA -> GspM
Description: Translation of GspM
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspM
Components:
Function Name Type
product GspM protein
reactant gspCDEFGHIJKLMO_mRNA RNA
gspCDEFGHIJKLMO_mRNA GspO
Name: gspCDEFGHIJKLMO_mRNA -> GspO
Description: Translation of GspO
Type: translation
Pathway Components: gspCDEFGHIJKLMO_mRNA -> GspO
Components:
Function Name Type
product GspO protein
reactant gspCDEFGHIJKLMO_mRNA RNA
GspO type IV prepilin cleaved type IV prepilin + peptide
Name: type IV prepilin -> cleaved type IV prepilin + peptide
Description: Reaction transforming type IV prepilin into cleaved type IV prepilin, peptide
Type: state transition
Pathway Components: type IV prepilin - GspO -> cleaved type IV prepilin + peptide
Components:
Function Name Type
catalyzer GspO protein
product cleaved type IV prepilin simple_molecule
product peptide simple_molecule
reactant type IV prepilin simple_molecule
fecIR_mRNA FecI
Name: fecIR_mRNA -> FecI
Description: Translation of FecI
Type: translation
Pathway Components: fecIR_mRNA -> FecI
Components:
Function Name Type
product FecI protein
reactant fecIR_mRNA RNA
RpoC + FecI + RpoB + RpoA RpoB-RpoC-RpoA-FecI
Name: RpoC + FecI + RpoB + RpoA -> RpoB-RpoC-RpoA-FecI
Description: Reaction transforming RpoC, FecI, RpoB, RpoA into RpoB-RpoC-RpoA-FecI
Type: state transition
Pathway Components: RpoC + FecI + RpoB + RpoA -> RpoB-RpoC-RpoA-FecI
Components:
Function Name Type
reactant FecI protein
reactant RpoA protein
reactant RpoB protein
product RpoB-RpoC-RpoA-FecI complex
reactant RpoC protein
fecIR_mRNA FecR
Name: fecIR_mRNA -> FecR
Description: Translation of FecR
Type: translation
Pathway Components: fecIR_mRNA -> FecR
Components:
Function Name Type
product FecR protein
reactant fecIR_mRNA RNA
FecR + FecA FecA-FecR
Name: FecR + FecA -> FecA-FecR
Description: Reaction transforming FecR, FecA into FecA-FecR
Type: state transition
Pathway Components: FecR + FecA -> FecA-FecR
Components:
Function Name Type
reactant FecA protein
product FecA-FecR complex
reactant FecR protein
casABCDE12_mRNA CasA
Name: casABCDE12_mRNA -> CasA
Description: Translation of CasA
Type: translation
Pathway Components: casABCDE12_mRNA -> CasA
Components:
Function Name Type
product CasA protein
reactant casABCDE12_mRNA RNA
CasC + CasE + CasD + CasA + CasB CasA-CasB-CasC-CasD-CasE
Name: CasC + CasE + CasD + CasA + CasB -> CasA-CasB-CasC-CasD-CasE
Description: Reaction transforming CasC, CasE, CasD, CasA, CasB into CasA-CasB-CasC-CasD-CasE
Type: state transition
Pathway Components: CasC + CasE + CasD + CasA + CasB -> CasA-CasB-CasC-CasD-CasE
Components:
Function Name Type
reactant CasA protein
product CasA-CasB-CasC-CasD-CasE complex
reactant CasB protein
reactant CasC protein
reactant CasD protein
reactant CasE protein
CasA-CasB-CasC-CasD-CasE pre-crRNA crRNA
Name: pre-crRNA -> crRNA
Description: Reaction transforming pre-crRNA into crRNA
Type: state transition
Pathway Components: pre-crRNA - CasA-CasB-CasC-CasD-CasE -> crRNA
Components:
Function Name Type
catalyzer CasA-CasB-CasC-CasD-CasE complex
product crRNA simple_molecule
reactant pre-crRNA simple_molecule
casABCDE12_mRNA CasB
Name: casABCDE12_mRNA -> CasB
Description: Translation of CasB
Type: translation
Pathway Components: casABCDE12_mRNA -> CasB
Components:
Function Name Type
product CasB protein
reactant casABCDE12_mRNA RNA
casABCDE12_mRNA CasC
Name: casABCDE12_mRNA -> CasC
Description: Translation of CasC
Type: translation
Pathway Components: casABCDE12_mRNA -> CasC
Components:
Function Name Type
product CasC protein
reactant casABCDE12_mRNA RNA
casABCDE12_mRNA CasD
Name: casABCDE12_mRNA -> CasD
Description: Translation of CasD
Type: translation
Pathway Components: casABCDE12_mRNA -> CasD
Components:
Function Name Type
product CasD protein
reactant casABCDE12_mRNA RNA
casABCDE12_mRNA CasE
Name: casABCDE12_mRNA -> CasE
Description: Translation of CasE
Type: translation
Pathway Components: casABCDE12_mRNA -> CasE
Components:
Function Name Type
product CasE protein
reactant casABCDE12_mRNA RNA
casABCDE12_mRNA Cas1
Name: casABCDE12_mRNA -> Cas1
Description: Translation of Cas1
Type: translation
Pathway Components: casABCDE12_mRNA -> Cas1
Components:
Function Name Type
product Cas1 protein
reactant casABCDE12_mRNA RNA
Cas2 + Cas1 Cas2-Cas1
Name: Cas2 + Cas1 -> Cas2-Cas1
Description: Reaction transforming Cas2, Cas1 into Cas2-Cas1
Type: state transition
Pathway Components: Cas2 + Cas1 -> Cas2-Cas1
Components:
Function Name Type
reactant Cas1 protein
reactant Cas2 protein
product Cas2-Cas1 complex
casABCDE12_mRNA Cas2
Name: casABCDE12_mRNA -> Cas2
Description: Translation of Cas2
Type: translation
Pathway Components: casABCDE12_mRNA -> Cas2
Components:
Function Name Type
product Cas2 protein
reactant casABCDE12_mRNA RNA
oxepin-CoA 3-oxo-5,6-didehydrosuberyl-CoA
Name: oxepin-CoA -> 3-oxo-5,6-didehydrosuberyl-CoA
Description: Transformation of oxepin-CoA into 3-oxo-5,6-didehydrosuberyl-CoA by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: oxepin-CoA / RXNMETA-12671 / RXNMETA-12672 / 3-oxo-5,6-didehydrosuberyl-CoA
Components:
Function Name Type
product 3-oxo-5,6-didehydrosuberyl-CoA simple_molecule
reactant oxepin-CoA simple_molecule
R1 R2 R3 R4 R5 R6 R7 R8 R9 R10 R11 R12 R13 R14 R15 R16 R17 R18 R19 R20 R21 R22 R23 R24 R25 R26 R27 R28 R29 R30 R31 R32 R33 R34 R35 R36 R37 R38 R39 R40 R41 R42 R43 R44 R45 R46 R47 R48 R49 R50 R51 R52 R53 R54 R55 R56 R57 R58 R59



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