RegulonDB RegulonDB

SoxS Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
enterobactin InaA nfo_mRNA ribA_mRNA nepI inosine TolC macrolide antibiotic_Ext AcrF AcrB fldB_mRNA lactaldehyde DARP lpxC_mRNA inosine_Ext DecR ybjC-nfsA-rimK-ybjN_mRNA ZinT fumarate chenodiol This Gensor Unit is not yet available EmrY fldA-uof-fur AcrA YgiB decR_mRNA nfsB_mRNA TolC acrAB_mRNA diphosphate TolC marRAB acnA_mRNA inaA_mRNA malate ydbK-ompN_mRNA acetate UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine acrAB fpr glycoaldehyde TolC chenodiol_Ext superoxide cytidylate Mlc sodA_mRNA guanosine Rob soxS_mRNA EmrB PtsG MdtA glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate TolC L-glutamate MdtF single stranded DNA PoxB aldA_mRNA yrbL_mRNA novobiocin_Ext AcrA CO2 glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate SoxS MarA [protein] C-terminal L-glutamate drug_Ext soxS This Gensor Unit is not yet available uof-fur MarB 5'-phosphooligonucleotide HPr - phosphorylated_Ext tetrahydropteridine EmrK cis-aconitate OmpN fpr_mRNA PtsG FldB ybjC-nfsA-rimK-ybjN Uof RimK hexane guanosine-triphosphate AcrF NfsB acrZ hexane_Ext MdtA acrZ_mRNA EmrB AcrB deoxycholate acetyl-CoA AldA pgi_mRNA MacB MdtB citrate TolC NepI fldB MarR caprate_Ext deoxycholate_Ext YgiA PtsG Nfo ubiquinol pyruvate micF_mRNA EmrY ydbK-ompN NfsA AcrA ptsG RibA PtsH FumC ptsG_mRNA inaA 6,7-dihydropteridine nfo Methyl-D-glucoside_Ext This Gensor Unit is not yet available fructose-6-P TolC YbjN pqiABC_mRNA This Gensor Unit is not yet available caprate glycolate ydbK WaaY oxygen MdtC Fur Pgi zinT This Gensor Unit is not yet available phosphate methyl alpha-D-glucoside 6-phosphate macrolide antibiotic Crr MdtE oxidized nitroaromatic compound ethanal TolC rob_mRNA Mlc ubiquinone This Gensor Unit is not yet available EmrA reduced nitroaromatic compound MdtE zinT_mRNA UDP-3-O-(3-hydroxytetradecanoyl)glucosamine oxidized ferredoxin AcrE FldA TolC I-CIT zwf SodA WaaZ pqiABC novobiocin guanosine_Ext acriflavine drug EmrK uof-fur_mRNA EmrA reduced ferredoxin lactate sodA pgi zwf_mRNA Crr glucose-6-P LpxC PqiA micF MacA MdtC [protein] alpha-L-glu-alpha-L-glu glucopyranose_Ext hydrophilic solute or ion 600 Da_Ext fldA-uof-fur_mRNA lpxC acetoin poxB marRAB_mRNA nfsB acriflavine_Ext yrbL perhydrol AcrD AcnA ribA formate AcrD YdbK decR YrbL ydbK_mRNA AcrE MdtB rob KDOIII-lipopolysaccharide RNA:MicF acnA MacA YgiC nepI_mRNA PqiB 6-phosphogluconolactone Fpr MacB MdtF (Kdo)2-lipid IVA Zwf enterobactin_Ext poxB_mRNA coenzyme A AcrZ PqiC YbjC CMP-Kdo hydrophilic solute or ion 600 Da aldA


Gensor Unit       
Name: SoxS
Classification:
Groups: Inorganic ion transport and metabolism
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Replication, recombination and repair
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Translation, ribosomal structure and biogenesis
Gene Ontology Terms (GO): biological_process GO:0046256 - 2,4,6-trinitrotoluene catabolic process
GO:0018410 - C-terminal protein amino acid modification
GO:0006281 - DNA repair
GO:0042355 - L-fucose catabolic process
GO:0009432 - SOS response
GO:0015895 - alkane transport
Read more >
cellular_component GO:1990196 - MacAB-TolC complex
GO:0036406 - anchored component of periplasmic side of cell outer membrane
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:1990281 - efflux pump complex
GO:0016021 - integral component of membrane
Read more >
molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0004155 - 6,7-dihydropteridine reductase activity
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0001216 - DNA-binding transcription activator activity
GO:0003700 - DNA-binding transcription factor activity
Read more >
Components:
  Function Name Type
  simple_molecule (Kdo)2-lipid IVA simple_molecule
  simple_molecule 5'-phosphooligonucleotide simple_molecule
  simple_molecule 6,7-dihydropteridine simple_molecule
  simple_molecule 6-phosphogluconolactone simple_molecule
  protein AcnA protein
  protein AcrA protein
  complex AcrA-TolC-AcrB complex
  protein AcrB protein
  protein AcrD protein
  complex AcrD-AcrA-TolC complex
  protein AcrE protein
  complex AcrE-AcrF-TolC complex
  protein AcrF protein
  protein AcrZ protein
  protein AldA protein
  simple_molecule CMP-Kdo simple_molecule
  simple_molecule CO2 simple_molecule
  protein Crr protein
  simple_molecule DARP simple_molecule
  protein DecR protein
  protein EmrA protein
  complex EmrA-EmrB-TolC complex
  protein EmrB protein
  protein EmrK protein
  complex EmrK-EmrY-TolC complex
  protein EmrY protein
  simple_molecule FldA simple_molecule
  protein FldB protein
  protein Fpr protein
  protein FumC protein
  protein Fur protein
  simple_molecule HPr - phosphorylated_Ext simple_molecule
  simple_molecule I-CIT simple_molecule
  protein InaA protein
  simple_molecule KDOIII-lipopolysaccharide simple_molecule
  simple_molecule L-glutamate simple_molecule
  protein LpxC protein
  protein MacA protein
  protein MacB protein
  protein MarA protein
  protein MarB protein
  protein MarR protein
  protein MdtA protein
  protein MdtB protein
  protein MdtC protein
  protein MdtE protein
  protein MdtF protein
  simple_molecule Methyl-D-glucoside_Ext simple_molecule
  protein Mlc protein
  protein NepI protein
  protein Nfo protein
  protein NfsA protein
  protein NfsB protein
  protein OmpN protein
  protein Pgi protein
  protein PoxB protein
  protein PqiA protein
  protein PqiB protein
  protein PqiC protein
  protein PtsG protein
  complex PtsG-Crr complex
  complex PtsG-Mlc complex
  simple_molecule PtsH simple_molecule
  protein RNA:MicF protein
  protein RibA protein
  protein RimK protein
  protein Rob protein
  protein SodA protein
  protein SoxS protein
  protein TolC protein
  complex TolC-MacB-MacA complex
  complex TolC-MdtC-MdtB-MdtA complex
  complex TolC-MdtE-MdtF complex
  simple_molecule UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine simple_molecule
  simple_molecule UDP-3-O-(3-hydroxytetradecanoyl)glucosamine simple_molecule
  protein Uof protein
  protein WaaY protein
  protein WaaZ protein
  protein YbjC protein
  protein YbjN protein
  protein YdbK protein
  protein YgiA protein
  protein YgiB protein
  protein YgiC protein
  protein YrbL protein
  protein ZinT protein
  protein Zwf protein
  simple_molecule [protein] α-L-glu-α-L-glu simple_molecule
  simple_molecule [protein] C-terminal L-glutamate simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule acetoin simple_molecule
  simple_molecule acetyl-CoA simple_molecule
  gene acnA gene
  RNA acnA_mRNA RNA
  gene acrAB gene
  RNA acrAB_mRNA RNA
  gene acrZ gene
  RNA acrZ_mRNA RNA
  simple_molecule acriflavine simple_molecule
  simple_molecule acriflavine_Ext simple_molecule
  gene aldA gene
  RNA aldA_mRNA RNA
  simple_molecule caprate simple_molecule
  simple_molecule caprate_Ext simple_molecule
  simple_molecule chenodiol simple_molecule
  simple_molecule chenodiol_Ext simple_molecule
  simple_molecule cis-aconitate simple_molecule
  simple_molecule citrate simple_molecule
  simple_molecule coenzyme A simple_molecule
  simple_molecule cytidylate simple_molecule
  gene decR gene
  RNA decR_mRNA RNA
  simple_molecule deoxycholate simple_molecule
  simple_molecule deoxycholate_Ext simple_molecule
  simple_molecule diphosphate simple_molecule
  simple_molecule drug simple_molecule
  simple_molecule drug_Ext simple_molecule
  simple_molecule enterobactin simple_molecule
  simple_molecule enterobactin_Ext simple_molecule
  simple_molecule ethanal simple_molecule
  gene fldA-uof-fur gene
  RNA fldA-uof-fur_mRNA RNA
  gene fldB gene
  RNA fldB_mRNA RNA
  simple_molecule formate simple_molecule
  gene fpr gene
  RNA fpr_mRNA RNA
  simple_molecule fructose-6-P simple_molecule
  gene fumC gene
  RNA fumC_mRNA RNA
  simple_molecule fumarate simple_molecule
  simple_molecule glucopyranose_Ext simple_molecule
  simple_molecule glucose-6-P simple_molecule
  simple_molecule glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate simple_molecule
  simple_molecule glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate simple_molecule
  simple_molecule glycoaldehyde simple_molecule
  simple_molecule glycolate simple_molecule
  simple_molecule guanosine simple_molecule
  simple_molecule guanosine-triphosphate simple_molecule
  simple_molecule guanosine_Ext simple_molecule
  simple_molecule hexane simple_molecule
  simple_molecule hexane_Ext simple_molecule
  simple_molecule hydrophilic solute or ion 600 Da simple_molecule
  simple_molecule hydrophilic solute or ion 600 Da_Ext simple_molecule
  gene inaA gene
  RNA inaA_mRNA RNA
  simple_molecule inosine simple_molecule
  simple_molecule inosine_Ext simple_molecule
  simple_molecule lactaldehyde simple_molecule
  simple_molecule lactate simple_molecule
  gene lpxC gene
  RNA lpxC_mRNA RNA
  simple_molecule macrolide antibiotic simple_molecule
  simple_molecule macrolide antibiotic_Ext simple_molecule
  simple_molecule malate simple_molecule
  gene marRAB gene
  RNA marRAB_mRNA RNA
  simple_molecule methyl α-D-glucoside 6-phosphate simple_molecule
  gene micF gene
  RNA micF_mRNA RNA
  gene nepI gene
  RNA nepI_mRNA RNA
  gene nfo gene
  RNA nfo_mRNA RNA
  gene nfsB gene
  RNA nfsB_mRNA RNA
  simple_molecule novobiocin simple_molecule
  simple_molecule novobiocin_Ext simple_molecule
  simple_molecule oxidized ferredoxin simple_molecule
  simple_molecule oxidized nitroaromatic compound simple_molecule
  simple_molecule oxygen simple_molecule
  simple_molecule perhydrol simple_molecule
  gene pgi gene
  RNA pgi_mRNA RNA
  simple_molecule phosphate simple_molecule
  gene poxB gene
  RNA poxB_mRNA RNA
  gene pqiABC gene
  RNA pqiABC_mRNA RNA
  gene ptsG gene
  RNA ptsG_mRNA RNA
  simple_molecule pyruvate simple_molecule
  simple_molecule reduced ferredoxin simple_molecule
  simple_molecule reduced nitroaromatic compound simple_molecule
  gene ribA gene
  RNA ribA_mRNA RNA
  gene rob gene
  RNA rob_mRNA RNA
  simple_molecule single stranded DNA simple_molecule
  gene sodA gene
  RNA sodA_mRNA RNA
  gene soxS gene
  RNA soxS_mRNA RNA
  simple_molecule superoxide simple_molecule
  simple_molecule tetrahydropteridine simple_molecule
  gene tolC-ygiABC gene
  RNA tolC-ygiABC_mRNA RNA
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinone simple_molecule
  gene uof-fur gene
  RNA uof-fur_mRNA RNA
  gene waaYZ gene
  RNA waaYZ_mRNA RNA
  gene ybjC-nfsA-rimK-ybjN gene
  RNA ybjC-nfsA-rimK-ybjN_mRNA RNA
  gene ydbK gene
  gene ydbK-ompN gene
  RNA ydbK-ompN_mRNA RNA
  RNA ydbK_mRNA RNA
  gene yrbL gene
  RNA yrbL_mRNA RNA
  gene zinT gene
  RNA zinT_mRNA RNA
  gene zwf gene
  RNA zwf_mRNA RNA


Reactions       
Showing 130 reactions
SoxS acnA acnA_mRNA
Name: acnA -> acnA_mRNA
Description: Transcription of transcription unit acnA. Reaction activation by SoxS.
Type: transcription
Pathway Components: acnA - SoxS -> acnA_mRNA
Components:
Function Name Type
activator SoxS protein
reactant acnA gene
product acnA_mRNA RNA
SoxS acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB. Reaction activation by SoxS.
Type: transcription
Pathway Components: acrAB - SoxS -> acrAB_mRNA
Components:
Function Name Type
activator SoxS protein
reactant acrAB gene
product acrAB_mRNA RNA
SoxS acrZ acrZ_mRNA
Name: acrZ -> acrZ_mRNA
Description: Transcription of transcription unit acrZ. Reaction activation by SoxS.
Type: transcription
Pathway Components: acrZ - SoxS -> acrZ_mRNA
Components:
Function Name Type
activator SoxS protein
reactant acrZ gene
product acrZ_mRNA RNA
SoxS aldA aldA_mRNA
Name: aldA -> aldA_mRNA
Description: Transcription of transcription unit aldA. Reaction activation by SoxS.
Type: transcription
Pathway Components: aldA - SoxS -> aldA_mRNA
Components:
Function Name Type
activator SoxS protein
reactant aldA gene
product aldA_mRNA RNA
SoxS decR decR_mRNA
Name: decR -> decR_mRNA
Description: Transcription of transcription unit decR. Reaction activation by SoxS.
Type: transcription
Pathway Components: decR - SoxS -> decR_mRNA
Components:
Function Name Type
activator SoxS protein
reactant decR gene
product decR_mRNA RNA
SoxS fldA-uof-fur fldA-uof-fur_mRNA
Name: fldA-uof-fur -> fldA-uof-fur_mRNA
Description: Transcription of transcription unit fldA-uof-fur. Reaction activation by SoxS.
Type: transcription
Pathway Components: fldA-uof-fur - SoxS -> fldA-uof-fur_mRNA
Components:
Function Name Type
activator SoxS protein
reactant fldA-uof-fur gene
product fldA-uof-fur_mRNA RNA
SoxS fldB fldB_mRNA
Name: fldB -> fldB_mRNA
Description: Transcription of transcription unit fldB. Reaction activation by SoxS.
Type: transcription
Pathway Components: fldB - SoxS -> fldB_mRNA
Components:
Function Name Type
activator SoxS protein
reactant fldB gene
product fldB_mRNA RNA
SoxS fpr fpr_mRNA
Name: fpr -> fpr_mRNA
Description: Transcription of transcription unit fpr. Reaction activation by SoxS.
Type: transcription
Pathway Components: fpr - SoxS -> fpr_mRNA
Components:
Function Name Type
activator SoxS protein
reactant fpr gene
product fpr_mRNA RNA
SoxS fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC. Reaction activation by SoxS.
Type: transcription
Pathway Components: fumC - SoxS -> fumC_mRNA
Components:
Function Name Type
activator SoxS protein
reactant fumC gene
product fumC_mRNA RNA
SoxS inaA inaA_mRNA
Name: inaA -> inaA_mRNA
Description: Transcription of transcription unit inaA. Reaction activation by SoxS.
Type: transcription
Pathway Components: inaA - SoxS -> inaA_mRNA
Components:
Function Name Type
activator SoxS protein
reactant inaA gene
product inaA_mRNA RNA
SoxS lpxC lpxC_mRNA
Name: lpxC -> lpxC_mRNA
Description: Transcription of transcription unit lpxC. Reaction activation by SoxS.
Type: transcription
Pathway Components: lpxC - SoxS -> lpxC_mRNA
Components:
Function Name Type
activator SoxS protein
reactant lpxC gene
product lpxC_mRNA RNA
SoxS marRAB marRAB_mRNA
Name: marRAB -> marRAB_mRNA
Description: Transcription of transcription unit marRAB. Reaction activation by SoxS.
Type: transcription
Pathway Components: marRAB - SoxS -> marRAB_mRNA
Components:
Function Name Type
activator SoxS protein
reactant marRAB gene
product marRAB_mRNA RNA
SoxS micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF. Reaction activation by SoxS.
Type: transcription
Pathway Components: micF - SoxS -> micF_mRNA
Components:
Function Name Type
activator SoxS protein
reactant micF gene
product micF_mRNA RNA
SoxS nepI nepI_mRNA
Name: nepI -> nepI_mRNA
Description: Transcription of transcription unit nepI. Reaction activation by SoxS.
Type: transcription
Pathway Components: nepI - SoxS -> nepI_mRNA
Components:
Function Name Type
activator SoxS protein
reactant nepI gene
product nepI_mRNA RNA
SoxS nfo nfo_mRNA
Name: nfo -> nfo_mRNA
Description: Transcription of transcription unit nfo. Reaction activation by SoxS.
Type: transcription
Pathway Components: nfo - SoxS -> nfo_mRNA
Components:
Function Name Type
activator SoxS protein
reactant nfo gene
product nfo_mRNA RNA
SoxS nfsB nfsB_mRNA
Name: nfsB -> nfsB_mRNA
Description: Transcription of transcription unit nfsB. Reaction activation by SoxS.
Type: transcription
Pathway Components: nfsB - SoxS -> nfsB_mRNA
Components:
Function Name Type
activator SoxS protein
reactant nfsB gene
product nfsB_mRNA RNA
SoxS pgi pgi_mRNA
Name: pgi -> pgi_mRNA
Description: Transcription of transcription unit pgi. Reaction activation by SoxS.
Type: transcription
Pathway Components: pgi - SoxS -> pgi_mRNA
Components:
Function Name Type
activator SoxS protein
reactant pgi gene
product pgi_mRNA RNA
SoxS poxB poxB_mRNA
Name: poxB -> poxB_mRNA
Description: Transcription of transcription unit poxB. Reaction activation by SoxS.
Type: transcription
Pathway Components: poxB - SoxS -> poxB_mRNA
Components:
Function Name Type
activator SoxS protein
reactant poxB gene
product poxB_mRNA RNA
SoxS pqiABC pqiABC_mRNA
Name: pqiABC -> pqiABC_mRNA
Description: Transcription of transcription unit pqiABC. Reaction activation by SoxS.
Type: transcription
Pathway Components: pqiABC - SoxS -> pqiABC_mRNA
Components:
Function Name Type
activator SoxS protein
reactant pqiABC gene
product pqiABC_mRNA RNA
SoxS ptsG ptsG_mRNA
Name: ptsG -> ptsG_mRNA
Description: Transcription of transcription unit ptsG. Reaction activation by SoxS.
Type: transcription
Pathway Components: ptsG - SoxS -> ptsG_mRNA
Components:
Function Name Type
activator SoxS protein
reactant ptsG gene
product ptsG_mRNA RNA
SoxS ribA ribA_mRNA
Name: ribA -> ribA_mRNA
Description: Transcription of transcription unit ribA. Reaction activation by SoxS.
Type: transcription
Pathway Components: ribA - SoxS -> ribA_mRNA
Components:
Function Name Type
activator SoxS protein
reactant ribA gene
product ribA_mRNA RNA
SoxS sodA sodA_mRNA
Name: sodA -> sodA_mRNA
Description: Transcription of transcription unit sodA. Reaction activation by SoxS.
Type: transcription
Pathway Components: sodA - SoxS -> sodA_mRNA
Components:
Function Name Type
activator SoxS protein
reactant sodA gene
product sodA_mRNA RNA
SoxS tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC. Reaction activation by SoxS.
Type: transcription
Pathway Components: tolC-ygiABC - SoxS -> tolC-ygiABC_mRNA
Components:
Function Name Type
activator SoxS protein
reactant tolC-ygiABC gene
product tolC-ygiABC_mRNA RNA
SoxS uof-fur uof-fur_mRNA
Name: uof-fur -> uof-fur_mRNA
Description: Transcription of transcription unit uof-fur. Reaction activation by SoxS.
Type: transcription
Pathway Components: uof-fur - SoxS -> uof-fur_mRNA
Components:
Function Name Type
activator SoxS protein
reactant uof-fur gene
product uof-fur_mRNA RNA
SoxS waaYZ waaYZ_mRNA
Name: waaYZ -> waaYZ_mRNA
Description: Transcription of transcription unit waaYZ. Reaction activation by SoxS.
Type: transcription
Pathway Components: waaYZ - SoxS -> waaYZ_mRNA
Components:
Function Name Type
activator SoxS protein
reactant waaYZ gene
product waaYZ_mRNA RNA
SoxS ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN. Reaction activation by SoxS.
Type: transcription
Pathway Components: ybjC-nfsA-rimK-ybjN - SoxS -> ybjC-nfsA-rimK-ybjN_mRNA
Components:
Function Name Type
activator SoxS protein
reactant ybjC-nfsA-rimK-ybjN gene
product ybjC-nfsA-rimK-ybjN_mRNA RNA
SoxS ydbK ydbK_mRNA
Name: ydbK -> ydbK_mRNA
Description: Transcription of transcription unit ydbK. Reaction activation by SoxS.
Type: transcription
Pathway Components: ydbK - SoxS -> ydbK_mRNA
Components:
Function Name Type
activator SoxS protein
reactant ydbK gene
product ydbK_mRNA RNA
SoxS ydbK-ompN ydbK-ompN_mRNA
Name: ydbK-ompN -> ydbK-ompN_mRNA
Description: Transcription of transcription unit ydbK-ompN. Reaction activation by SoxS.
Type: transcription
Pathway Components: ydbK-ompN - SoxS -> ydbK-ompN_mRNA
Components:
Function Name Type
activator SoxS protein
reactant ydbK-ompN gene
product ydbK-ompN_mRNA RNA
SoxS yrbL yrbL_mRNA
Name: yrbL -> yrbL_mRNA
Description: Transcription of transcription unit yrbL. Reaction activation by SoxS.
Type: transcription
Pathway Components: yrbL - SoxS -> yrbL_mRNA
Components:
Function Name Type
activator SoxS protein
reactant yrbL gene
product yrbL_mRNA RNA
SoxS zinT zinT_mRNA
Name: zinT -> zinT_mRNA
Description: Transcription of transcription unit zinT. Reaction activation by SoxS.
Type: transcription
Pathway Components: zinT - SoxS -> zinT_mRNA
Components:
Function Name Type
activator SoxS protein
reactant zinT gene
product zinT_mRNA RNA
SoxS zwf zwf_mRNA
Name: zwf -> zwf_mRNA
Description: Transcription of transcription unit zwf. Reaction activation by SoxS.
Type: transcription
Pathway Components: zwf - SoxS -> zwf_mRNA
Components:
Function Name Type
activator SoxS protein
reactant zwf gene
product zwf_mRNA RNA
SoxS rob rob_mRNA
Name: rob -> rob_mRNA
Description: Transcription of transcription unit rob. Reaction inhibition by SoxS.
Type: transcription
Pathway Components: rob - SoxS -> rob_mRNA
Components:
Function Name Type
inhibitor SoxS protein
reactant rob gene
product rob_mRNA RNA
SoxS soxS soxS_mRNA
Name: soxS -> soxS_mRNA
Description: Transcription of transcription unit soxS. Reaction inhibition by SoxS.
Type: transcription
Pathway Components: soxS - SoxS -> soxS_mRNA
Components:
Function Name Type
inhibitor SoxS protein
reactant soxS gene
product soxS_mRNA RNA
zwf_mRNA Zwf
Name: zwf_mRNA -> Zwf
Description: Translation of Zwf
Type: translation
Pathway Components: zwf_mRNA -> Zwf
Components:
Function Name Type
product Zwf protein
reactant zwf_mRNA RNA
Zwf glucose-6-P 6-phosphogluconolactone
Name: glucose-6-P -> 6-phosphogluconolactone
Description: Reaction transforming glucose-6-P into 6-phosphogluconolactone
Type: state transition
Pathway Components: glucose-6-P - Zwf -> 6-phosphogluconolactone
Components:
Function Name Type
product 6-phosphogluconolactone simple_molecule
catalyzer Zwf protein
reactant glucose-6-P simple_molecule
yrbL_mRNA YrbL
Name: yrbL_mRNA -> YrbL
Description: Translation of YrbL
Type: translation
Pathway Components: yrbL_mRNA -> YrbL
Components:
Function Name Type
product YrbL protein
reactant yrbL_mRNA RNA
fldA-uof-fur_mRNA FldA
Name: fldA-uof-fur_mRNA -> FldA
Description: Translation of FldA
Type: translation
Pathway Components: fldA-uof-fur_mRNA -> FldA
Components:
Function Name Type
product FldA simple_molecule
reactant fldA-uof-fur_mRNA RNA
fldA-uof-fur_mRNA Uof
Name: fldA-uof-fur_mRNA -> Uof
Description: Translation of Uof
Type: translation
Pathway Components: fldA-uof-fur_mRNA -> Uof
Components:
Function Name Type
product Uof protein
reactant fldA-uof-fur_mRNA RNA
fldA-uof-fur_mRNA Fur
Name: fldA-uof-fur_mRNA -> Fur
Description: Translation of Fur
Type: translation
Pathway Components: fldA-uof-fur_mRNA -> Fur
Components:
Function Name Type
product Fur protein
reactant fldA-uof-fur_mRNA RNA
marRAB_mRNA MarR
Name: marRAB_mRNA -> MarR
Description: Translation of MarR
Type: translation
Pathway Components: marRAB_mRNA -> MarR
Components:
Function Name Type
product MarR protein
reactant marRAB_mRNA RNA
marRAB_mRNA MarA
Name: marRAB_mRNA -> MarA
Description: Translation of MarA
Type: translation
Pathway Components: marRAB_mRNA -> MarA
Components:
Function Name Type
product MarA protein
reactant marRAB_mRNA RNA
marRAB_mRNA MarB
Name: marRAB_mRNA -> MarB
Description: Translation of MarB
Type: translation
Pathway Components: marRAB_mRNA -> MarB
Components:
Function Name Type
product MarB protein
reactant marRAB_mRNA RNA
rob_mRNA Rob
Name: rob_mRNA -> Rob
Description: Translation of Rob
Type: translation
Pathway Components: rob_mRNA -> Rob
Components:
Function Name Type
product Rob protein
reactant rob_mRNA RNA
zinT_mRNA ZinT
Name: zinT_mRNA -> ZinT
Description: Translation of ZinT
Type: translation
Pathway Components: zinT_mRNA -> ZinT
Components:
Function Name Type
product ZinT protein
reactant zinT_mRNA RNA
inaA_mRNA InaA
Name: inaA_mRNA -> InaA
Description: Translation of InaA
Type: translation
Pathway Components: inaA_mRNA -> InaA
Components:
Function Name Type
product InaA protein
reactant inaA_mRNA RNA
acnA_mRNA AcnA
Name: acnA_mRNA -> AcnA
Description: Translation of AcnA
Type: translation
Pathway Components: acnA_mRNA -> AcnA
Components:
Function Name Type
product AcnA protein
reactant acnA_mRNA RNA
AcnA cis-aconitate I-CIT
Name: cis-aconitate -> I-CIT
Description: Reaction transforming cis-aconitate into I-CIT
Type: state transition
Pathway Components: cis-aconitate - AcnA -> I-CIT
Components:
Function Name Type
catalyzer AcnA protein
product I-CIT simple_molecule
reactant cis-aconitate simple_molecule
AcnA citrate cis-aconitate
Name: citrate -> cis-aconitate
Description: Reaction transforming citrate into cis-aconitate
Type: state transition
Pathway Components: citrate - AcnA -> cis-aconitate
Components:
Function Name Type
catalyzer AcnA protein
product cis-aconitate simple_molecule
reactant citrate simple_molecule
sodA_mRNA SodA
Name: sodA_mRNA -> SodA
Description: Translation of SodA
Type: translation
Pathway Components: sodA_mRNA -> SodA
Components:
Function Name Type
product SodA protein
reactant sodA_mRNA RNA
SodA perhydrol superoxide perhydrol + oxygen
Name: superoxide -> perhydrol + oxygen
Description: Reaction transforming superoxide into perhydrol, oxygen
Type: state transition
Pathway Components: superoxide - SodA - perhydrol -> perhydrol + oxygen
Components:
Function Name Type
catalyzer SodA protein
product oxygen simple_molecule
inhibitor perhydrol simple_molecule
product perhydrol simple_molecule
reactant superoxide simple_molecule
tolC-ygiABC_mRNA TolC
Name: tolC-ygiABC_mRNA -> TolC
Description: Translation of TolC
Type: translation
Pathway Components: tolC-ygiABC_mRNA -> TolC
Components:
Function Name Type