RegulonDB RegulonDB

SgrR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
TbpA alaC ThiP TbpA SgrT This Gensor Unit is not yet available thiamin alanine ThiQ RNA:SgrS ketoglutarate thiamin_Ext lactose_Ext pyruvate lactose ThiP L-glutamate alaC_mRNA ThiQ AlaC sgrST-setA SetA SgrR This Gensor Unit is not yet available sgrST-setA_mRNA


Gensor Unit       
Name: SgrR
Classification:
Groups: Inorganic ion transport and metabolism
Transcription
Carbohydrate transport and metabolism
Amino acid transport and metabolism
Coenzyme transport and metabolism
Gene Ontology Terms (GO): biological_process GO:0030632 - D-alanine biosynthetic process
GO:0019272 - L-alanine biosynthetic process from pyruvate
GO:0006523 - alanine biosynthetic process
GO:0009058 - biosynthetic process
GO:0008643 - carbohydrate transport
GO:0036448 - cellular response to glucose-phosphate stress
Read more >
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
Read more >
molecular_function GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0042626 - ATPase-coupled transmembrane transporter activity
GO:0003677 - DNA binding
GO:0004021 - L-alanine:2-oxoglutarate aminotransferase activity
GO:0000984 - bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding
GO:0005351 - carbohydrate:proton symporter activity
Read more >
Components:
  Function Name Type
  protein AlaC protein
  simple_molecule L-glutamate simple_molecule
  protein RNA:SgrS protein
  protein SetA protein
  protein SgrR protein
  protein SgrT protein
  protein TbpA protein
  protein ThiP protein
  protein ThiQ protein
  complex ThiQ-ThiP-TbpA complex
  gene alaC gene
  RNA alaC_mRNA RNA
  simple_molecule alanine simple_molecule
  simple_molecule ketoglutarate simple_molecule
  simple_molecule lactose simple_molecule
  simple_molecule lactose_Ext simple_molecule
  simple_molecule pyruvate simple_molecule
  gene sgrR-sroA-tbpA-thiPQ gene
  RNA sgrR-sroA-tbpA-thiPQ_mRNA RNA
  gene sgrST-setA gene
  RNA sgrST-setA_mRNA RNA
  simple_molecule thiamin simple_molecule
  simple_molecule thiamin_Ext simple_molecule


Reactions       
Showing 15 reactions
SgrR alaC alaC_mRNA
Name: alaC -> alaC_mRNA
Description: Transcription of transcription unit alaC. Reaction activation by SgrR.
Type: transcription
Pathway Components: alaC - SgrR -> alaC_mRNA
Components:
Function Name Type
activator SgrR protein
reactant alaC gene
product alaC_mRNA RNA
SgrR sgrST-setA sgrST-setA_mRNA
Name: sgrST-setA -> sgrST-setA_mRNA
Description: Transcription of transcription unit sgrST-setA. Reaction activation by SgrR.
Type: transcription
Pathway Components: sgrST-setA - SgrR -> sgrST-setA_mRNA
Components:
Function Name Type
activator SgrR protein
reactant sgrST-setA gene
product sgrST-setA_mRNA RNA
SgrR sgrR-sroA-tbpA-thiPQ sgrR-sroA-tbpA-thiPQ_mRNA
Name: sgrR-sroA-tbpA-thiPQ -> sgrR-sroA-tbpA-thiPQ_mRNA
Description: Transcription of transcription unit sgrR-sroA-tbpA-thiPQ. Reaction inhibition by SgrR.
Type: transcription
Pathway Components: sgrR-sroA-tbpA-thiPQ - SgrR -> sgrR-sroA-tbpA-thiPQ_mRNA
Components:
Function Name Type
inhibitor SgrR protein
reactant sgrR-sroA-tbpA-thiPQ gene
product sgrR-sroA-tbpA-thiPQ_mRNA RNA
alaC_mRNA AlaC
Name: alaC_mRNA -> AlaC
Description: Translation of AlaC
Type: translation
Pathway Components: alaC_mRNA -> AlaC
Components:
Function Name Type
product AlaC protein
reactant alaC_mRNA RNA
AlaC ketoglutarate + alanine L-glutamate + pyruvate
Name: ketoglutarate + alanine -> L-glutamate + pyruvate
Description: Reaction transforming ketoglutarate, alanine into L-glutamate, pyruvate
Type: state transition
Pathway Components: ketoglutarate + alanine - AlaC -> L-glutamate + pyruvate
Components:
Function Name Type
catalyzer AlaC protein
product L-glutamate simple_molecule
reactant alanine simple_molecule
reactant ketoglutarate simple_molecule
product pyruvate simple_molecule
sgrR-sroA-tbpA-thiPQ_mRNA SgrR
Name: sgrR-sroA-tbpA-thiPQ_mRNA -> SgrR
Description: Translation of SgrR
Type: translation
Pathway Components: sgrR-sroA-tbpA-thiPQ_mRNA -> SgrR
Components:
Function Name Type
product SgrR protein
reactant sgrR-sroA-tbpA-thiPQ_mRNA RNA
sgrR-sroA-tbpA-thiPQ_mRNA TbpA
Name: sgrR-sroA-tbpA-thiPQ_mRNA -> TbpA
Description: Translation of TbpA
Type: translation
Pathway Components: sgrR-sroA-tbpA-thiPQ_mRNA -> TbpA
Components:
Function Name Type
product TbpA protein
reactant sgrR-sroA-tbpA-thiPQ_mRNA RNA
ThiP + TbpA + ThiQ ThiQ-ThiP-TbpA
Name: ThiP + TbpA + ThiQ -> ThiQ-ThiP-TbpA
Description: Reaction transforming ThiP, TbpA, ThiQ into ThiQ-ThiP-TbpA
Type: state transition
Pathway Components: ThiP + TbpA + ThiQ -> ThiQ-ThiP-TbpA
Components:
Function Name Type
reactant TbpA protein
reactant ThiP protein
reactant ThiQ protein
product ThiQ-ThiP-TbpA complex
ThiQ-ThiP-TbpA thiamin_Ext thiamin
Name: thiamin_Ext -> thiamin
Description: Transport of thiamin_Ext through a bacterial membrane, leading to the presence of thiamin inside the cell.
Type: transport
Pathway Components: thiamin_Ext - ThiQ-ThiP-TbpA -> thiamin
Components:
Function Name Type
catalyzer ThiQ-ThiP-TbpA complex
product thiamin simple_molecule
reactant thiamin_Ext simple_molecule
sgrR-sroA-tbpA-thiPQ_mRNA ThiP
Name: sgrR-sroA-tbpA-thiPQ_mRNA -> ThiP
Description: Translation of ThiP
Type: translation
Pathway Components: sgrR-sroA-tbpA-thiPQ_mRNA -> ThiP
Components:
Function Name Type
product ThiP protein
reactant sgrR-sroA-tbpA-thiPQ_mRNA RNA
sgrR-sroA-tbpA-thiPQ_mRNA ThiQ
Name: sgrR-sroA-tbpA-thiPQ_mRNA -> ThiQ
Description: Translation of ThiQ
Type: translation
Pathway Components: sgrR-sroA-tbpA-thiPQ_mRNA -> ThiQ
Components:
Function Name Type
product ThiQ protein
reactant sgrR-sroA-tbpA-thiPQ_mRNA RNA
sgrST-setA_mRNA RNA:SgrS
Name: sgrST-setA_mRNA -> RNA:SgrS
Description: Translation of RNA:SgrS
Type: translation
Pathway Components: sgrST-setA_mRNA -> RNA:SgrS
Components:
Function Name Type
product RNA:SgrS protein
reactant sgrST-setA_mRNA RNA
sgrST-setA_mRNA SgrT
Name: sgrST-setA_mRNA -> SgrT
Description: Translation of SgrT
Type: translation
Pathway Components: sgrST-setA_mRNA -> SgrT
Components:
Function Name Type
product SgrT protein
reactant sgrST-setA_mRNA RNA
sgrST-setA_mRNA SetA
Name: sgrST-setA_mRNA -> SetA
Description: Translation of SetA
Type: translation
Pathway Components: sgrST-setA_mRNA -> SetA
Components:
Function Name Type
product SetA protein
reactant sgrST-setA_mRNA RNA
SetA lactose_Ext lactose
Name: lactose_Ext -> lactose
Description: Transport of lactose_Ext through a bacterial membrane, leading to the presence of lactose inside the cell.
Type: transport
Pathway Components: lactose_Ext - SetA -> lactose
Components:
Function Name Type
catalyzer SetA protein
product lactose simple_molecule
reactant lactose_Ext simple_molecule



RegulonDB