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RutR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
uracil_Ext This Gensor Unit is not yet available (Z)-2-methyl-peroxyaminoacrylate FepC NemA Reduced FMN c-di-GMP flavin mononucleotide lactoylglutathione CarA FepG carAB glutathione RutD peroxy aminoacrylate GadX FepB A(H2) glutamine thymine CarA CarB FepC This Gensor Unit is not yet available rutABCDEFG_mRNA RutB (Z)-2-methylureidoperacrylic acid aminoacrylate thymine nemRA_mRNA pdeR carbonate nemRA-gloA_mRNA N-EM RutR malonate-S-ald This Gensor Unit is not yet available RutG GadW uracil oxopropanal nemRA RutA fepB_mRNA oxygen RutF NemR ferric enterobactin_Ext RutC fepB uracil FepD rutR RutE ureidoperacrylic acid L-glutamate carAB_mRNA ammonium carbamate 3-ureidoacrylate RutR carbamoyl-P GloA rutR_mRNA FepD FepB This Gensor Unit is not yet available pdeR_mRNA ethylsuccinimide acceptors RutR 5'pGpG ferric enterobactin PdeR CarB nemRA-gloA phosphate hydracrylic acid FepG rutABCDEFG uracil


Gensor Unit       
Name: RutR
Description: Molecular biology level
Detailed: In the absence of uracil and thymine, RutR positively regulates the expression of genes required for carbamoyl phosphate biosynthetic process and, negatively regulates the expression of genes required for enterobactin transport and xenobiotics and methylglyoxal catabolic processes. Under these conditions, RutR remains unmodified, binds its target sites, enabling in some cases but preventing at others its own expression and the expression of its regulated genes. In the presence of uracil and thymine, RutR is modified to RutR-uracil and RutR-thymine, unbinds its target sites, preventing in some cases but enabling in others, its own expression and the expression of its regulated genes.
Less detailed: In the absence of uracil and thymine, RutR positively regulates the expression of genes needed for carbamoyl phosphate biosynthetic process and , negatively regulates its own expression and the expression of genes required for enterobactin transport and xenobiotics and methylglyoxal catabolic processes.

Physiology level
Detailed: The presence of uracilo or thymine inhibits the expression of genes involved with carbamoyl phosphate synthesis and induces the expression of genes required for enterobactin transport, and xenobiotics and methylglyoxal catabolic processes. Under these conditions, the genes necessary for carbamoyl phosphate synthesis from ammonia or from glutamine are not expressed, and the genes necessary for enterobactin transport into cell, conversion of uracil to malonate-S-ald and of thymine to methyl-peroxyaminoacrylate are expressed.
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Classification:
Groups: Inorganic ion transport and metabolism
Secondary metabolites biosynthesis, transport and catabolism
Transcription
Energy production and conversion
Signal transduction mechanisms
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Nucleotide transport and metabolism
Gene Ontology Terms (GO): biological_process GO:0044205 - 'de novo' UMP biosynthetic process
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process
GO:0046256 - 2,4,6-trinitrotoluene catabolic process
GO:0006526 - arginine biosynthetic process
GO:0001121 - bacterial transcription
GO:0008652 - cellular amino acid biosynthetic process
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cellular_component GO:0005951 - carbamoyl-phosphate synthase complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
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molecular_function GO:0035527 - 3-hydroxypropionate dehydrogenase (NADP+) activity
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0001217 - DNA-binding transcription repressor activity
GO:0010181 - FMN binding
GO:0008752 - FMN reductase activity
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Components:
  Function Name Type
  simple_molecule (Z)-2-methyl-peroxyaminoacrylate simple_molecule
  simple_molecule (Z)-2-methylureidoperacrylic acid simple_molecule
  simple_molecule 3-ureidoacrylate simple_molecule
  simple_molecule 5'pGpG simple_molecule
  simple_molecule A(H2) simple_molecule
  protein CarA protein
  protein CarB protein
  complex CarB-CarA complex
  protein FepB protein
  protein FepC protein
  complex FepC-FepD-FepG-FepB complex
  protein FepD protein
  protein FepG protein
  protein GadW protein
  protein GadX protein
  protein GloA protein
  simple_molecule L-glutamate simple_molecule
  simple_molecule N-EM simple_molecule
  protein NemA protein
  protein NemR protein
  protein PdeR protein
  simple_molecule Reduced FMN simple_molecule
  protein RutA protein
  protein RutB protein
  protein RutC protein
  protein RutD protein
  protein RutE protein
  protein RutF protein
  protein RutG protein
  protein RutR protein
  complex RutR-thymine complex
  complex RutR-uracil complex
  simple_molecule acceptors simple_molecule
  simple_molecule aminoacrylate simple_molecule
  simple_molecule ammonium simple_molecule
  simple_molecule c-di-GMP simple_molecule
  gene carAB gene
  RNA carAB_mRNA RNA
  simple_molecule carbamate simple_molecule
  simple_molecule carbamoyl-P simple_molecule
  simple_molecule carbonate simple_molecule
  simple_molecule ethylsuccinimide simple_molecule
  gene fepB gene
  RNA fepB_mRNA RNA
  simple_molecule ferric enterobactin simple_molecule
  simple_molecule ferric enterobactin_Ext simple_molecule
  simple_molecule flavin mononucleotide simple_molecule
  gene gadX gene
  gene gadXW gene
  RNA gadXW_mRNA RNA
  RNA gadX_mRNA RNA
  simple_molecule glutamine simple_molecule
  simple_molecule glutathione simple_molecule
  simple_molecule hydracrylic acid simple_molecule
  simple_molecule lactoylglutathione simple_molecule
  simple_molecule malonate-S-ald simple_molecule
  gene nemRA gene
  gene nemRA-gloA gene
  RNA nemRA-gloA_mRNA RNA
  RNA nemRA_mRNA RNA
  simple_molecule oxopropanal simple_molecule
  simple_molecule oxygen simple_molecule
  gene pdeR gene
  RNA pdeR_mRNA RNA
  simple_molecule peroxy aminoacrylate simple_molecule
  simple_molecule phosphate simple_molecule
  gene rutABCDEFG gene
  RNA rutABCDEFG_mRNA RNA
  gene rutR gene
  RNA rutR_mRNA RNA
  simple_molecule thymine simple_molecule
  simple_molecule uracil simple_molecule
  simple_molecule uracil_Ext simple_molecule
  simple_molecule ureidoperacrylic acid simple_molecule


Reactions       
Showing 49 reactions
RutR carAB carAB_mRNA
Name: carAB -> carAB_mRNA
Description: Transcription of transcription unit carAB. Reaction activation by RutR.
Type: transcription
Pathway Components: carAB - RutR -> carAB_mRNA
Components:
Function Name Type
activator RutR protein
reactant carAB gene
product carAB_mRNA RNA
RutR fepB fepB_mRNA
Name: fepB -> fepB_mRNA
Description: Transcription of transcription unit fepB. Reaction inhibition by RutR.
Type: transcription
Pathway Components: fepB - RutR -> fepB_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant fepB gene
product fepB_mRNA RNA
RutR gadX gadX_mRNA
Name: gadX -> gadX_mRNA
Description: Transcription of transcription unit gadX. Reaction inhibition by RutR.
Type: transcription
Pathway Components: gadX - RutR -> gadX_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant gadX gene
product gadX_mRNA RNA
RutR gadXW gadXW_mRNA
Name: gadXW -> gadXW_mRNA
Description: Transcription of transcription unit gadXW. Reaction inhibition by RutR.
Type: transcription
Pathway Components: gadXW - RutR -> gadXW_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant gadXW gene
product gadXW_mRNA RNA
RutR nemRA nemRA_mRNA
Name: nemRA -> nemRA_mRNA
Description: Transcription of transcription unit nemRA. Reaction inhibition by RutR.
Type: transcription
Pathway Components: nemRA - RutR -> nemRA_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant nemRA gene
product nemRA_mRNA RNA
RutR nemRA-gloA nemRA-gloA_mRNA
Name: nemRA-gloA -> nemRA-gloA_mRNA
Description: Transcription of transcription unit nemRA-gloA. Reaction inhibition by RutR.
Type: transcription
Pathway Components: nemRA-gloA - RutR -> nemRA-gloA_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant nemRA-gloA gene
product nemRA-gloA_mRNA RNA
RutR pdeR pdeR_mRNA
Name: pdeR -> pdeR_mRNA
Description: Transcription of transcription unit pdeR. Reaction inhibition by RutR.
Type: transcription
Pathway Components: pdeR - RutR -> pdeR_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant pdeR gene
product pdeR_mRNA RNA
RutR rutABCDEFG rutABCDEFG_mRNA
Name: rutABCDEFG -> rutABCDEFG_mRNA
Description: Transcription of transcription unit rutABCDEFG. Reaction inhibition by RutR.
Type: transcription
Pathway Components: rutABCDEFG - RutR -> rutABCDEFG_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant rutABCDEFG gene
product rutABCDEFG_mRNA RNA
RutR rutR rutR_mRNA
Name: rutR -> rutR_mRNA
Description: Transcription of transcription unit rutR. Reaction inhibition by RutR.
Type: transcription
Pathway Components: rutR - RutR -> rutR_mRNA
Components:
Function Name Type
inhibitor RutR protein
reactant rutR gene
product rutR_mRNA RNA
thymine + RutR RutR-thymine
Name: thymine + RutR -> RutR-thymine
Description: Reaction transforming thymine, RutR into RutR-thymine
Type: state transition
Pathway Components: thymine + RutR -> RutR-thymine
Components:
Function Name Type
reactant RutR protein
product RutR-thymine complex
reactant thymine simple_molecule
uracil + RutR RutR-uracil
Name: uracil + RutR -> RutR-uracil
Description: Reaction transforming uracil, RutR into RutR-uracil
Type: state transition
Pathway Components: uracil + RutR -> RutR-uracil
Components:
Function Name Type
reactant RutR protein
product RutR-uracil complex
reactant uracil simple_molecule
nemRA_mRNA NemR
Name: nemRA_mRNA -> NemR
Description: Translation of NemR
Type: translation
Pathway Components: nemRA_mRNA -> NemR
Components:
Function Name Type
product NemR protein
reactant nemRA_mRNA RNA
nemRA_mRNA NemA
Name: nemRA_mRNA -> NemA
Description: Translation of NemA
Type: translation
Pathway Components: nemRA_mRNA -> NemA
Components:
Function Name Type
product NemA protein
reactant nemRA_mRNA RNA
NemA N-EM ethylsuccinimide
Name: N-EM -> ethylsuccinimide
Description: Reaction transforming N-EM into ethylsuccinimide
Type: state transition
Pathway Components: N-EM - NemA -> ethylsuccinimide
Components:
Function Name Type
reactant N-EM simple_molecule
catalyzer NemA protein
product ethylsuccinimide simple_molecule
nemRA-gloA_mRNA NemR
Name: nemRA-gloA_mRNA -> NemR
Description: Translation of NemR
Type: translation
Pathway Components: nemRA-gloA_mRNA -> NemR
Components:
Function Name Type
product NemR protein
reactant nemRA-gloA_mRNA RNA
nemRA-gloA_mRNA NemA
Name: nemRA-gloA_mRNA -> NemA
Description: Translation of NemA
Type: translation
Pathway Components: nemRA-gloA_mRNA -> NemA
Components:
Function Name Type
product NemA protein
reactant nemRA-gloA_mRNA RNA
nemRA-gloA_mRNA GloA
Name: nemRA-gloA_mRNA -> GloA
Description: Translation of GloA
Type: translation
Pathway Components: nemRA-gloA_mRNA -> GloA
Components:
Function Name Type
product GloA protein
reactant nemRA-gloA_mRNA RNA
GloA oxopropanal + glutathione lactoylglutathione
Name: oxopropanal + glutathione -> lactoylglutathione
Description: Reaction transforming oxopropanal, glutathione into lactoylglutathione
Type: state transition
Pathway Components: oxopropanal + glutathione - GloA -> lactoylglutathione
Components:
Function Name Type
catalyzer GloA protein
reactant glutathione simple_molecule
product lactoylglutathione simple_molecule
reactant oxopropanal simple_molecule
carAB_mRNA CarA
Name: carAB_mRNA -> CarA
Description: Translation of CarA
Type: translation
Pathway Components: carAB_mRNA -> CarA
Components:
Function Name Type
product CarA protein
reactant carAB_mRNA RNA
CarB + CarA CarB-CarA
Name: CarB + CarA -> CarB-CarA
Description: Reaction transforming CarB, CarA into CarB-CarA
Type: state transition
Pathway Components: CarB + CarA -> CarB-CarA
Components:
Function Name Type
reactant CarA protein
reactant CarB protein
product CarB-CarA complex
CarB-CarA ammonium carbonate + glutamine carbamoyl-P + L-glutamate + phosphate
Name: carbonate + glutamine -> carbamoyl-P + L-glutamate + phosphate
Description: Reaction transforming carbonate, glutamine into carbamoyl-P, L-glutamate , phosphate
Type: state transition
Pathway Components: carbonate + glutamine - CarB-CarA - ammonium -> carbamoyl-P + L-glutamate + phosphate
Components:
Function Name Type
catalyzer CarB-CarA complex
product L-glutamate simple_molecule
inhibitor ammonium simple_molecule
product carbamoyl-P simple_molecule
reactant carbonate simple_molecule
reactant glutamine simple_molecule
product phosphate simple_molecule
CarB-CarA glutamine L-glutamate + ammonium
Name: glutamine -> L-glutamate + ammonium
Description: Reaction transforming glutamine into L-glutamate, ammonium
Type: state transition
Pathway Components: glutamine - CarB-CarA -> L-glutamate + ammonium
Components:
Function Name Type
catalyzer CarB-CarA complex
product L-glutamate simple_molecule
product ammonium simple_molecule
reactant glutamine simple_molecule
CarB-CarA carbonate + ammonium carbamoyl-P + phosphate
Name: carbonate + ammonium -> carbamoyl-P + phosphate
Description: Reaction transforming carbonate, ammonium into carbamoyl-P, phosphate
Type: state transition
Pathway Components: carbonate + ammonium - CarB-CarA -> carbamoyl-P + phosphate
Components:
Function Name Type
catalyzer CarB-CarA complex
reactant ammonium simple_molecule
product carbamoyl-P simple_molecule
reactant carbonate simple_molecule
product phosphate simple_molecule
carAB_mRNA CarB
Name: carAB_mRNA -> CarB
Description: Translation of CarB
Type: translation
Pathway Components: carAB_mRNA -> CarB
Components:
Function Name Type
product CarB protein
reactant carAB_mRNA RNA
gadX_mRNA GadX
Name: gadX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadX_mRNA -> GadX
Components:
Function Name Type
product GadX protein
reactant gadX_mRNA RNA
fepB_mRNA FepB
Name: fepB_mRNA -> FepB
Description: Translation of FepB
Type: translation
Pathway Components: fepB_mRNA -> FepB
Components:
Function Name Type
product FepB protein
reactant fepB_mRNA RNA
FepG + FepC + FepB + FepD FepC-FepD-FepG-FepB
Name: FepG + FepC + FepB + FepD -> FepC-FepD-FepG-FepB
Description: Reaction transforming FepG, FepC, FepB, FepD into FepC-FepD-FepG-FepB
Type: state transition
Pathway Components: FepG + FepC + FepB + FepD -> FepC-FepD-FepG-FepB
Components:
Function Name Type
reactant FepB protein
reactant FepC protein
product FepC-FepD-FepG-FepB complex
reactant FepD protein
reactant FepG protein
FepC-FepD-FepG-FepB ferric enterobactin_Ext ferric enterobactin
Name: ferric enterobactin_Ext -> ferric enterobactin
Description: Transport of ferric enterobactin_Ext through a bacterial membrane, leading to the presence of ferric enterobactin inside the cell.
Type: transport
Pathway Components: ferric enterobactin_Ext - FepC-FepD-FepG-FepB -> ferric enterobactin
Components:
Function Name Type
catalyzer FepC-FepD-FepG-FepB complex
product ferric enterobactin simple_molecule
reactant ferric enterobactin_Ext simple_molecule
gadXW_mRNA GadX
Name: gadXW_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadXW_mRNA -> GadX
Components:
Function Name Type
product GadX protein
reactant gadXW_mRNA RNA
gadXW_mRNA GadW
Name: gadXW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Pathway Components: gadXW_mRNA -> GadW
Components:
Function Name Type
product GadW protein
reactant gadXW_mRNA RNA
rutR_mRNA RutR
Name: rutR_mRNA -> RutR
Description: Translation of RutR
Type: translation
Pathway Components: rutR_mRNA -> RutR
Components:
Function Name Type
product RutR protein
reactant rutR_mRNA RNA
rutABCDEFG_mRNA RutA
Name: rutABCDEFG_mRNA -> RutA
Description: Translation of RutA
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutA
Components:
Function Name Type
product RutA protein
reactant rutABCDEFG_mRNA RNA
RutA Reduced FMN + uracil + oxygen ureidoperacrylic acid + flavin mononucleotide
Name: Reduced FMN + uracil + oxygen -> ureidoperacrylic acid + flavin mononucleotide
Description: Reaction transforming Reduced FMN, uracil, oxygen into ureidoperacrylic acid, flavin mononucleotide
Type: state transition
Pathway Components: Reduced FMN + uracil + oxygen - RutA -> ureidoperacrylic acid + flavin mononucleotide
Components:
Function Name Type
reactant Reduced FMN simple_molecule
catalyzer RutA protein
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
reactant uracil simple_molecule
product ureidoperacrylic acid simple_molecule
RutA Reduced FMN + thymine + oxygen Products
Name: Reduced FMN + thymine + oxygen -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide
Description: Reaction transforming Reduced FMN, thymine, oxygen into (Z)-2-methylureidoperacrylic acid, flavin mononucleotide
Type: state transition
Pathway Components: Reduced FMN + thymine + oxygen - RutA -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide
Components:
Function Name Type
product (Z)-2-methylureidoperacrylic acid simple_molecule
reactant Reduced FMN simple_molecule
catalyzer RutA protein
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
reactant thymine simple_molecule
rutABCDEFG_mRNA RutB
Name: rutABCDEFG_mRNA -> RutB
Description: Translation of RutB
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutB
Components:
Function Name Type
product RutB protein
reactant rutABCDEFG_mRNA RNA
RutB ureidoperacrylic acid peroxy aminoacrylate + carbamate
Name: ureidoperacrylic acid -> peroxy aminoacrylate + carbamate
Description: Reaction transforming ureidoperacrylic acid into peroxy aminoacrylate, carbamate
Type: state transition
Pathway Components: ureidoperacrylic acid - RutB -> peroxy aminoacrylate + carbamate
Components:
Function Name Type
catalyzer RutB protein
product carbamate simple_molecule
product peroxy aminoacrylate simple_molecule
reactant ureidoperacrylic acid simple_molecule
RutB 3-ureidoacrylate aminoacrylate + carbamate
Name: 3-ureidoacrylate -> aminoacrylate + carbamate
Description: Reaction transforming 3-ureidoacrylate into aminoacrylate, carbamate
Type: state transition
Pathway Components: 3-ureidoacrylate - RutB -> aminoacrylate + carbamate
Components:
Function Name Type
reactant 3-ureidoacrylate simple_molecule
catalyzer RutB protein
product aminoacrylate simple_molecule
product carbamate simple_molecule
RutB (Z)-2-methylureidoperacrylic acid (Z)-2-methyl-peroxyaminoacrylate + carbamate
Name: (Z)-2-methylureidoperacrylic acid -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Description: Reaction transforming (Z)-2-methylureidoperacrylic acid into (Z)-2-methyl-peroxyaminoacrylate, carbamate
Type: state transition
Pathway Components: (Z)-2-methylureidoperacrylic acid - RutB -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Components:
Function Name Type
product (Z)-2-methyl-peroxyaminoacrylate simple_molecule
reactant (Z)-2-methylureidoperacrylic acid simple_molecule
catalyzer RutB protein
product carbamate simple_molecule
rutABCDEFG_mRNA RutC
Name: rutABCDEFG_mRNA -> RutC
Description: Translation of RutC
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutC
Components:
Function Name Type
product RutC protein
reactant rutABCDEFG_mRNA RNA
RutC peroxy aminoacrylate + A(H2) aminoacrylate + acceptors
Name: peroxy aminoacrylate + A(H2) -> aminoacrylate + acceptors
Description: Reaction transforming peroxy aminoacrylate, A(H2) into aminoacrylate, acceptors
Type: state transition
Pathway Components: peroxy aminoacrylate + A(H2) - RutC -> aminoacrylate + acceptors
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer RutC protein
product acceptors simple_molecule
product aminoacrylate simple_molecule
reactant peroxy aminoacrylate simple_molecule
rutABCDEFG_mRNA RutD
Name: rutABCDEFG_mRNA -> RutD
Description: Translation of RutD
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutD
Components:
Function Name Type
product RutD protein
reactant rutABCDEFG_mRNA RNA
RutD aminoacrylate malonate-S-ald + ammonium
Name: aminoacrylate -> malonate-S-ald + ammonium
Description: Reaction transforming aminoacrylate into malonate-S-ald, ammonium
Type: state transition
Pathway Components: aminoacrylate - RutD -> malonate-S-ald + ammonium
Components:
Function Name Type
catalyzer RutD protein
reactant aminoacrylate simple_molecule
product ammonium simple_molecule
product malonate-S-ald simple_molecule
rutABCDEFG_mRNA RutE
Name: rutABCDEFG_mRNA -> RutE
Description: Translation of RutE
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutE
Components:
Function Name Type
product RutE protein
reactant rutABCDEFG_mRNA RNA
RutE malonate-S-ald hydracrylic acid
Name: malonate-S-ald -> hydracrylic acid
Description: Reaction transforming malonate-S-ald into hydracrylic acid
Type: state transition
Pathway Components: malonate-S-ald - RutE -> hydracrylic acid
Components:
Function Name Type
catalyzer RutE protein
product hydracrylic acid simple_molecule
reactant malonate-S-ald simple_molecule
rutABCDEFG_mRNA RutF
Name: rutABCDEFG_mRNA -> RutF
Description: Translation of RutF
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutF
Components:
Function Name Type
product RutF protein
reactant rutABCDEFG_mRNA RNA
rutABCDEFG_mRNA RutG
Name: rutABCDEFG_mRNA -> RutG
Description: Translation of RutG
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutG
Components:
Function Name Type
product RutG protein
reactant rutABCDEFG_mRNA RNA
RutG uracil_Ext uracil
Name: uracil_Ext -> uracil
Description: Transport of uracil_Ext through a bacterial membrane, leading to the presence of uracil inside the cell.
Type: transport
Pathway Components: uracil_Ext - RutG -> uracil
Components:
Function Name Type
catalyzer RutG protein
product uracil simple_molecule
reactant uracil_Ext simple_molecule
pdeR_mRNA PdeR
Name: pdeR_mRNA -> PdeR
Description: Translation of PdeR
Type: translation
Pathway Components: pdeR_mRNA -> PdeR
Components:
Function Name Type
product PdeR protein
reactant pdeR_mRNA RNA
PdeR c-di-GMP 5'pGpG
Name: c-di-GMP -> 5'pGpG
Description: Reaction transforming c-di-GMP into 5'pGpG
Type: state transition
Pathway Components: c-di-GMP - PdeR -> 5'pGpG
Components:
Function Name Type
product 5'pGpG simple_molecule
catalyzer PdeR protein
reactant c-di-GMP simple_molecule



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