RegulonDB RegulonDB

Rob Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
AldA MdtB [protein] C-terminal L-glutamate NfsB ala TolC fumarate mature peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide YbjN YgiC hexane_Ext nascent peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide oxygen EmrA drug_Ext novobiocin ldtB acnA_mRNA YgiA peptidoglycan tripeptide-Lpp crosslink AcrA ybjC-nfsA-rimK-ybjN_mRNA SodA glucose-6-P zwf peptidoglycan dimer (generic) drug marRAB_mRNA MdtF This Gensor Unit is not yet available AslB GlcNAc-1,6-anhydro-MurNAc-pentapeptide Zwf deoxycholate_Ext glycine nfsB_mRNA AcrZ chenodiol_Ext [protein] alpha-L-glu-alpha-L-glu MacB aldA MdtA TolC tetrahydropteridine EmrY RNA:MicF cis-aconitate mltF_mRNA micF_mRNA reduced nitroaromatic compound chenodiol acriflavine micF lipid II acrAB_mRNA TolC glycoaldehyde inaA_mRNA TolC LdtB 6,7-dihydropteridine AcrD marRAB MltF Rob EmrK aldA_mRNA citrate hexane NfsA sodA lactaldehyde MacA YgiB acrZ_mRNA inaA nfsB EmrA AcrB MdtE aslB_mRNA lactate This Gensor Unit is not yet available MarR AcrB FumC MlpA MdtC AcrE macrolide antibiotic_Ext macrolide antibiotic rob_mRNA AcrA acnA perhydrol enterobactin novobiocin_Ext AcrA glycolate enterobactin_Ext zwf_mRNA caprate_Ext nfo malate 6-phosphogluconolactone RimK sodA_mRNA MarA aslB MdtB 5'-phosphooligonucleotide EmrY AcrF caprate MacB oxidized nitroaromatic compound I-CIT nascent peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide MdtA TolC This Gensor Unit is not yet available ybjC-nfsA-rimK-ybjN GlcNAc-1,6-anhMurNAc-L-Ala-gamma-D-Glu-DAP-D-Ala acrZ peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide phosphate TolC superoxide Nfo MarB nfo_mRNA EmrB AcrD This Gensor Unit is not yet available acrAB MdtE EmrB L-glutamate nascent peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimelate) tripeptide rob MdtF mltF ldtB_mRNA InaA EmrK deoxycholate MacA acriflavine_Ext single stranded DNA YbjC TolC AcnA TolC TolC AcrE AcrF MdtC mature peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide


Gensor Unit       
Name: Rob
Classification:
Groups: Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Replication, recombination and repair
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0046256 - 2,4,6-trinitrotoluene catabolic process
GO:0018410 - C-terminal protein amino acid modification
GO:0006281 - DNA repair
GO:0043164 - Gram-negative-bacterium-type cell wall biogenesis
GO:0042355 - L-fucose catabolic process
GO:0009432 - SOS response
Read more >
cellular_component GO:1990196 - MacAB-TolC complex
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:1990281 - efflux pump complex
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
Read more >
molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0004155 - 6,7-dihydropteridine reductase activity
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0003700 - DNA-binding transcription factor activity
GO:0001217 - DNA-binding transcription repressor activity
Read more >
Components:
  Function Name Type
  simple_molecule 5'-phosphooligonucleotide simple_molecule
  simple_molecule 6,7-dihydropteridine simple_molecule
  simple_molecule 6-phosphogluconolactone simple_molecule
  protein AcnA protein
  protein AcrA protein
  complex AcrA-TolC-AcrB complex
  protein AcrB protein
  protein AcrD protein
  complex AcrD-AcrA-TolC complex
  protein AcrE protein
  complex AcrE-AcrF-TolC complex
  protein AcrF protein
  protein AcrZ protein
  protein AldA protein
  protein AslB protein
  protein EmrA protein
  complex EmrA-EmrB-TolC complex
  protein EmrB protein
  protein EmrK protein
  complex EmrK-EmrY-TolC complex
  protein EmrY protein
  protein FumC protein
  simple_molecule GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala simple_molecule
  simple_molecule GlcNAc-1,6-anhydro-MurNAc-pentapeptide simple_molecule
  simple_molecule I-CIT simple_molecule
  protein InaA protein
  simple_molecule L-glutamate simple_molecule
  protein LdtB protein
  protein MacA protein
  protein MacB protein
  protein MarA protein
  protein MarB protein
  protein MarR protein
  protein MdtA protein
  protein MdtB protein
  protein MdtC protein
  protein MdtE protein
  protein MdtF protein
  simple_molecule MlpA simple_molecule
  protein MltF protein
  protein Nfo protein
  protein NfsA protein
  protein NfsB protein
  protein RNA:MicF protein
  protein RimK protein
  protein Rob protein
  protein SodA protein
  protein TolC protein
  complex TolC-MacB-MacA complex
  complex TolC-MdtC-MdtB-MdtA complex
  complex TolC-MdtE-MdtF complex
  protein YbjC protein
  protein YbjN protein
  protein YgiA protein
  protein YgiB protein
  protein YgiC protein
  protein Zwf protein
  simple_molecule [protein] α-L-glu-α-L-glu simple_molecule
  simple_molecule [protein] C-terminal L-glutamate simple_molecule
  gene acnA gene
  RNA acnA_mRNA RNA
  gene acrAB gene
  RNA acrAB_mRNA RNA
  gene acrZ gene
  RNA acrZ_mRNA RNA
  simple_molecule acriflavine simple_molecule
  simple_molecule acriflavine_Ext simple_molecule
  simple_molecule ala simple_molecule
  gene aldA gene
  RNA aldA_mRNA RNA
  gene aslB gene
  RNA aslB_mRNA RNA
  simple_molecule caprate simple_molecule
  simple_molecule caprate_Ext simple_molecule
  simple_molecule chenodiol simple_molecule
  simple_molecule chenodiol_Ext simple_molecule
  simple_molecule cis-aconitate simple_molecule
  simple_molecule citrate simple_molecule
  simple_molecule deoxycholate simple_molecule
  simple_molecule deoxycholate_Ext simple_molecule
  simple_molecule drug simple_molecule
  simple_molecule drug_Ext simple_molecule
  simple_molecule enterobactin simple_molecule
  simple_molecule enterobactin_Ext simple_molecule
  gene fumC gene
  RNA fumC_mRNA RNA
  simple_molecule fumarate simple_molecule
  simple_molecule glucose-6-P simple_molecule
  simple_molecule glycine simple_molecule
  simple_molecule glycoaldehyde simple_molecule
  simple_molecule glycolate simple_molecule
  simple_molecule hexane simple_molecule
  simple_molecule hexane_Ext simple_molecule
  gene inaA gene
  RNA inaA_mRNA RNA
  simple_molecule lactaldehyde simple_molecule
  simple_molecule lactate simple_molecule
  gene ldtB gene
  RNA ldtB_mRNA RNA
  simple_molecule lipid II simple_molecule
  simple_molecule macrolide antibiotic simple_molecule
  simple_molecule macrolide antibiotic_Ext simple_molecule
  simple_molecule malate simple_molecule
  gene marRAB gene
  RNA marRAB_mRNA RNA
  simple_molecule mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule
  gene micF gene
  RNA micF_mRNA RNA
  gene mltF gene
  RNA mltF_mRNA RNA
  simple_molecule nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide simple_molecule
  simple_molecule nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
  simple_molecule nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule
  gene nfo gene
  RNA nfo_mRNA RNA
  gene nfsB gene
  RNA nfsB_mRNA RNA
  simple_molecule novobiocin simple_molecule
  simple_molecule novobiocin_Ext simple_molecule
  simple_molecule oxidized nitroaromatic compound simple_molecule
  simple_molecule oxygen simple_molecule
  simple_molecule peptidoglycan dimer (generic) simple_molecule
  simple_molecule peptidoglycan tripeptide-Lpp crosslink simple_molecule
  simple_molecule peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
  simple_molecule perhydrol simple_molecule
  simple_molecule phosphate simple_molecule
  simple_molecule reduced nitroaromatic compound simple_molecule
  gene rob gene
  RNA rob_mRNA RNA
  simple_molecule single stranded DNA simple_molecule
  gene sodA gene
  RNA sodA_mRNA RNA
  simple_molecule superoxide simple_molecule
  simple_molecule tetrahydropteridine simple_molecule
  gene tolC-ygiABC gene
  RNA tolC-ygiABC_mRNA RNA
  gene ybjC-nfsA-rimK-ybjN gene
  RNA ybjC-nfsA-rimK-ybjN_mRNA RNA
  gene zwf gene
  RNA zwf_mRNA RNA


Reactions       
Showing 81 reactions
Rob acnA acnA_mRNA
Name: acnA -> acnA_mRNA
Description: Transcription of transcription unit acnA. Reaction activation by Rob.
Type: transcription
Pathway Components: acnA - Rob -> acnA_mRNA
Components:
Function Name Type
activator Rob protein
reactant acnA gene
product acnA_mRNA RNA
Rob acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB. Reaction activation by Rob.
Type: transcription
Pathway Components: acrAB - Rob -> acrAB_mRNA
Components:
Function Name Type
activator Rob protein
reactant acrAB gene
product acrAB_mRNA RNA
Rob acrZ acrZ_mRNA
Name: acrZ -> acrZ_mRNA
Description: Transcription of transcription unit acrZ. Reaction activation by Rob.
Type: transcription
Pathway Components: acrZ - Rob -> acrZ_mRNA
Components:
Function Name Type
activator Rob protein
reactant acrZ gene
product acrZ_mRNA RNA
Rob aldA aldA_mRNA
Name: aldA -> aldA_mRNA
Description: Transcription of transcription unit aldA. Reaction activation by Rob.
Type: transcription
Pathway Components: aldA - Rob -> aldA_mRNA
Components:
Function Name Type
activator Rob protein
reactant aldA gene
product aldA_mRNA RNA
Rob aslB aslB_mRNA
Name: aslB -> aslB_mRNA
Description: Transcription of transcription unit aslB. Reaction activation by Rob.
Type: transcription
Pathway Components: aslB - Rob -> aslB_mRNA
Components:
Function Name Type
activator Rob protein
reactant aslB gene
product aslB_mRNA RNA
Rob fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC. Reaction activation by Rob.
Type: transcription
Pathway Components: fumC - Rob -> fumC_mRNA
Components:
Function Name Type
activator Rob protein
reactant fumC gene
product fumC_mRNA RNA
Rob inaA inaA_mRNA
Name: inaA -> inaA_mRNA
Description: Transcription of transcription unit inaA. Reaction activation by Rob.
Type: transcription
Pathway Components: inaA - Rob -> inaA_mRNA
Components:
Function Name Type
activator Rob protein
reactant inaA gene
product inaA_mRNA RNA
Rob ldtB ldtB_mRNA
Name: ldtB -> ldtB_mRNA
Description: Transcription of transcription unit ldtB. Reaction activation by Rob.
Type: transcription
Pathway Components: ldtB - Rob -> ldtB_mRNA
Components:
Function Name Type
activator Rob protein
reactant ldtB gene
product ldtB_mRNA RNA
Rob marRAB marRAB_mRNA
Name: marRAB -> marRAB_mRNA
Description: Transcription of transcription unit marRAB. Reaction activation by Rob.
Type: transcription
Pathway Components: marRAB - Rob -> marRAB_mRNA
Components:
Function Name Type
activator Rob protein
reactant marRAB gene
product marRAB_mRNA RNA
Rob micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF. Reaction activation by Rob.
Type: transcription
Pathway Components: micF - Rob -> micF_mRNA
Components:
Function Name Type
activator Rob protein
reactant micF gene
product micF_mRNA RNA
Rob mltF mltF_mRNA
Name: mltF -> mltF_mRNA
Description: Transcription of transcription unit mltF. Reaction activation by Rob.
Type: transcription
Pathway Components: mltF - Rob -> mltF_mRNA
Components:
Function Name Type
activator Rob protein
reactant mltF gene
product mltF_mRNA RNA
Rob nfo nfo_mRNA
Name: nfo -> nfo_mRNA
Description: Transcription of transcription unit nfo. Reaction activation by Rob.
Type: transcription
Pathway Components: nfo - Rob -> nfo_mRNA
Components:
Function Name Type
activator Rob protein
reactant nfo gene
product nfo_mRNA RNA
Rob nfsB nfsB_mRNA
Name: nfsB -> nfsB_mRNA
Description: Transcription of transcription unit nfsB. Reaction activation by Rob.
Type: transcription
Pathway Components: nfsB - Rob -> nfsB_mRNA
Components:
Function Name Type
activator Rob protein
reactant nfsB gene
product nfsB_mRNA RNA
Rob sodA sodA_mRNA
Name: sodA -> sodA_mRNA
Description: Transcription of transcription unit sodA. Reaction activation by Rob.
Type: transcription
Pathway Components: sodA - Rob -> sodA_mRNA
Components:
Function Name Type
activator Rob protein
reactant sodA gene
product sodA_mRNA RNA
Rob tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC. Reaction activation by Rob.
Type: transcription
Pathway Components: tolC-ygiABC - Rob -> tolC-ygiABC_mRNA
Components:
Function Name Type
activator Rob protein
reactant tolC-ygiABC gene
product tolC-ygiABC_mRNA RNA
Rob ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN. Reaction activation by Rob.
Type: transcription
Pathway Components: ybjC-nfsA-rimK-ybjN - Rob -> ybjC-nfsA-rimK-ybjN_mRNA
Components:
Function Name Type
activator Rob protein
reactant ybjC-nfsA-rimK-ybjN gene
product ybjC-nfsA-rimK-ybjN_mRNA RNA
Rob zwf zwf_mRNA
Name: zwf -> zwf_mRNA
Description: Transcription of transcription unit zwf. Reaction activation by Rob.
Type: transcription
Pathway Components: zwf - Rob -> zwf_mRNA
Components:
Function Name Type
activator Rob protein
reactant zwf gene
product zwf_mRNA RNA
Rob rob rob_mRNA
Name: rob -> rob_mRNA
Description: Transcription of transcription unit rob. Reaction inhibition by Rob.
Type: transcription
Pathway Components: rob - Rob -> rob_mRNA
Components:
Function Name Type
inhibitor Rob protein
reactant rob gene
product rob_mRNA RNA
aldA_mRNA AldA
Name: aldA_mRNA -> AldA
Description: Translation of AldA
Type: translation
Pathway Components: aldA_mRNA -> AldA
Components:
Function Name Type
product AldA protein
reactant aldA_mRNA RNA
AldA lactaldehyde lactaldehyde lactate
Name: lactaldehyde -> lactate
Description: Reaction transforming lactaldehyde into lactate
Type: state transition
Pathway Components: lactaldehyde - AldA - lactaldehyde -> lactate
Components:
Function Name Type
catalyzer AldA protein
inhibitor lactaldehyde simple_molecule
reactant lactaldehyde simple_molecule
product lactate simple_molecule
AldA glycoaldehyde glycoaldehyde glycolate
Name: glycoaldehyde -> glycolate
Description: Reaction transforming glycoaldehyde into glycolate
Type: state transition
Pathway Components: glycoaldehyde - AldA - glycoaldehyde -> glycolate
Components:
Function Name Type
catalyzer AldA protein
inhibitor glycoaldehyde simple_molecule
reactant glycoaldehyde simple_molecule
product glycolate simple_molecule
inaA_mRNA InaA
Name: inaA_mRNA -> InaA
Description: Translation of InaA
Type: translation
Pathway Components: inaA_mRNA -> InaA
Components:
Function Name Type
product InaA protein
reactant inaA_mRNA RNA
zwf_mRNA Zwf
Name: zwf_mRNA -> Zwf
Description: Translation of Zwf
Type: translation
Pathway Components: zwf_mRNA -> Zwf
Components:
Function Name Type
product Zwf protein
reactant zwf_mRNA RNA
Zwf glucose-6-P 6-phosphogluconolactone
Name: glucose-6-P -> 6-phosphogluconolactone
Description: Reaction transforming glucose-6-P into 6-phosphogluconolactone
Type: state transition
Pathway Components: glucose-6-P - Zwf -> 6-phosphogluconolactone
Components:
Function Name Type
product 6-phosphogluconolactone simple_molecule
catalyzer Zwf protein
reactant glucose-6-P simple_molecule
acrAB_mRNA AcrA
Name: acrAB_mRNA -> AcrA
Description: Translation of AcrA
Type: translation
Pathway Components: acrAB_mRNA -> AcrA
Components:
Function Name Type
product AcrA protein
reactant acrAB_mRNA RNA
TolC + AcrA + AcrD AcrD-AcrA-TolC
Name: TolC + AcrA + AcrD -> AcrD-AcrA-TolC
Description: Reaction transforming TolC, AcrA, AcrD into AcrD-AcrA-TolC
Type: state transition
Pathway Components: TolC + AcrA + AcrD -> AcrD-AcrA-TolC
Components:
Function Name Type
reactant AcrA protein
reactant AcrD protein
product AcrD-AcrA-TolC complex
reactant TolC protein
AcrA-TolC-AcrB AcrD-AcrA-TolC AcrE-AcrF-TolC EmrA-EmrB-TolC EmrK-EmrY-TolC TolC-MdtC-MdtB-MdtA TolC-MdtE-MdtF drug_Ext drug
Name: drug_Ext -> drug
Description: Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.
Type: transport
Pathway Components: drug_Ext - AcrA-TolC-AcrB - AcrD-AcrA-TolC - AcrE-AcrF-TolC - EmrA-EmrB-TolC - EmrK-EmrY-TolC - TolC-MdtC-MdtB-MdtA - TolC-MdtE-MdtF -> drug
Components: Show/Hide Components Table
TolC + AcrA + AcrB AcrA-TolC-AcrB
Name: TolC + AcrA + AcrB -> AcrA-TolC-AcrB
Description: Reaction transforming TolC, AcrA, AcrB into AcrA-TolC-AcrB
Type: state transition
Pathway Components: TolC + AcrA + AcrB -> AcrA-TolC-AcrB
Components:
Function Name Type
reactant AcrA protein
product AcrA-TolC-AcrB complex
reactant AcrB protein
reactant TolC protein
AcrA-TolC-AcrB acriflavine_Ext acriflavine
Name: acriflavine_Ext -> acriflavine
Description: Transport of acriflavine_Ext through a bacterial membrane, leading to the presence of acriflavine inside the cell.
Type: transport
Pathway Components: acriflavine_Ext - AcrA-TolC-AcrB -> acriflavine
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product acriflavine simple_molecule
reactant acriflavine_Ext simple_molecule
AcrA-TolC-AcrB chenodiol_Ext chenodiol
Name: chenodiol_Ext -> chenodiol
Description: Transport of chenodiol_Ext through a bacterial membrane, leading to the presence of chenodiol inside the cell.
Type: transport
Pathway Components: chenodiol_Ext - AcrA-TolC-AcrB -> chenodiol
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product chenodiol simple_molecule
reactant chenodiol_Ext simple_molecule
AcrA-TolC-AcrB caprate_Ext caprate
Name: caprate_Ext -> caprate
Description: Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.
Type: transport
Pathway Components: caprate_Ext - AcrA-TolC-AcrB -> caprate
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product caprate simple_molecule
reactant caprate_Ext simple_molecule
AcrA-TolC-AcrB hexane_Ext hexane
Name: hexane_Ext -> hexane
Description: Transport of hexane_Ext through a bacterial membrane, leading to the presence of hexane inside the cell.
Type: transport
Pathway Components: hexane_Ext - AcrA-TolC-AcrB -> hexane
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product hexane simple_molecule
reactant hexane_Ext simple_molecule
AcrA-TolC-AcrB enterobactin_Ext enterobactin
Name: enterobactin_Ext -> enterobactin
Description: Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.
Type: transport
Pathway Components: enterobactin_Ext - AcrA-TolC-AcrB -> enterobactin
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product enterobactin simple_molecule
reactant enterobactin_Ext simple_molecule
acrAB_mRNA AcrB
Name: acrAB_mRNA -> AcrB
Description: Translation of AcrB
Type: translation
Pathway Components: acrAB_mRNA -> AcrB
Components:
Function Name Type
product AcrB protein
reactant acrAB_mRNA RNA
fumC_mRNA FumC
Name: fumC_mRNA -> FumC
Description: Translation of FumC
Type: translation
Pathway Components: fumC_mRNA -> FumC
Components:
Function Name Type
product FumC protein
reactant fumC_mRNA RNA
FumC citrate superoxide malate fumarate
Name: malate -> fumarate
Description: Reaction transforming malate into fumarate
Type: state transition
Pathway Components: malate - FumC - citrate - superoxide -> fumarate
Components:
Function Name Type
catalyzer FumC protein
inhibitor citrate simple_molecule
product fumarate simple_molecule
reactant malate simple_molecule
inhibitor superoxide simple_molecule
acrZ_mRNA AcrZ
Name: acrZ_mRNA -> AcrZ
Description: Translation of AcrZ
Type: translation
Pathway Components: acrZ_mRNA -> AcrZ
Components:
Function Name Type
product AcrZ protein
reactant acrZ_mRNA RNA
nfsB_mRNA NfsB
Name: nfsB_mRNA -> NfsB
Description: Translation of NfsB
Type: translation
Pathway Components: nfsB_mRNA -> NfsB
Components:
Function Name Type
product NfsB protein
reactant nfsB_mRNA RNA
NfsA NfsB oxidized nitroaromatic compound reduced nitroaromatic compound
Name: oxidized nitroaromatic compound -> reduced nitroaromatic compound
Description: Reaction transforming oxidized nitroaromatic compound into reduced nitroaromatic compound
Type: state transition
Pathway Components: oxidized nitroaromatic compound - NfsA - NfsB -> reduced nitroaromatic compound
Components:
Function Name Type
catalyzer NfsA protein
catalyzer NfsB protein
reactant oxidized nitroaromatic compound simple_molecule
product reduced nitroaromatic compound simple_molecule
NfsB 6,7-dihydropteridine tetrahydropteridine
Name: 6,7-dihydropteridine -> tetrahydropteridine
Description: Reaction transforming 6,7-dihydropteridine into tetrahydropteridine
Type: state transition
Pathway Components: 6,7-dihydropteridine - NfsB -> tetrahydropteridine
Components:
Function Name Type
reactant 6,7-dihydropteridine simple_molecule
catalyzer NfsB protein
product tetrahydropteridine simple_molecule
rob_mRNA Rob
Name: rob_mRNA -> Rob
Description: Translation of Rob
Type: translation
Pathway Components: rob_mRNA -> Rob
Components:
Function Name Type
product Rob protein
reactant rob_mRNA RNA
mltF_mRNA MltF
Name: mltF_mRNA -> MltF
Description: Translation of MltF
Type: translation
Pathway Components: mltF_mRNA -> MltF
Components:
Function Name Type
product MltF protein
reactant mltF_mRNA RNA
MltF Reactants Products
Name: mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide -> mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
Description: Reaction transforming mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide into mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide, GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
Type: state transition
Pathway Components: mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide - MltF -> mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala
Components:
Function Name Type
product GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala simple_molecule
catalyzer MltF protein
product mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule
reactant mature peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule
MltF peptidoglycan dimer (generic) GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Name: peptidoglycan dimer (generic) -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Description: Reaction transforming peptidoglycan dimer (generic) into GlcNAc-1,6-anhydro-MurNAc-pentapeptide, lipid II
Type: state transition
Pathway Components: peptidoglycan dimer (generic) - MltF -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Components:
Function Name Type
product GlcNAc-1,6-anhydro-MurNAc-pentapeptide simple_molecule
catalyzer MltF protein
product lipid II simple_molecule
reactant peptidoglycan dimer (generic) simple_molecule
marRAB_mRNA MarR
Name: marRAB_mRNA -> MarR
Description: Translation of MarR
Type: translation
Pathway Components: marRAB_mRNA -> MarR
Components:
Function Name Type
product MarR protein
reactant marRAB_mRNA RNA
marRAB_mRNA MarA
Name: marRAB_mRNA -> MarA
Description: Translation of MarA
Type: translation
Pathway Components: marRAB_mRNA -> MarA
Components:
Function Name Type
product MarA protein
reactant marRAB_mRNA RNA
marRAB_mRNA MarB
Name: marRAB_mRNA -> MarB
Description: Translation of MarB
Type: translation
Pathway Components: marRAB_mRNA -> MarB
Components:
Function Name Type
product MarB protein
reactant marRAB_mRNA RNA
ldtB_mRNA LdtB
Name: ldtB_mRNA -> LdtB
Description: Translation of LdtB
Type: translation
Pathway Components: ldtB_mRNA -> LdtB
Components:
Function Name Type
product LdtB protein
reactant ldtB_mRNA RNA
LdtB Reactants Products
Name: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + glycine -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + ala
Description: Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, glycine into nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide, ala
Type: state transition
Pathway Components: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + glycine - LdtB -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide + ala
Components:
Function Name Type
catalyzer LdtB protein
product ala simple_molecule
reactant glycine simple_molecule
reactant nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
product nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide simple_molecule
LdtB Reactants Products
Name: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide + ala
Description: Reaction transforming nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide into nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide, ala
Type: state transition
Pathway Components: nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide - LdtB -> nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide + ala
Components:
Function Name Type
catalyzer LdtB protein
product ala simple_molecule
product nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate) tripeptide simple_molecule
reactant nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
LdtB Reactants peptidoglycan tripeptide-Lpp crosslink + ala
Name: peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + MlpA -> peptidoglycan tripeptide-Lpp crosslink + ala
Description: Reaction transforming peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide, MlpA into peptidoglycan tripeptide-Lpp crosslink, ala
Type: state transition
Pathway Components: peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide + MlpA - LdtB -> peptidoglycan tripeptide-Lpp crosslink + ala
Components:
Function Name Type
catalyzer LdtB protein
reactant MlpA simple_molecule
product ala simple_molecule
product peptidoglycan tripeptide-Lpp crosslink simple_molecule
reactant peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide simple_molecule
nfo_mRNA Nfo
Name: nfo_mRNA -> Nfo
Description: Translation of Nfo
Type: translation
Pathway Components: nfo_mRNA -> Nfo
Components:
Function Name Type
product Nfo protein
reactant nfo_mRNA RNA
Nfo single stranded DNA 5'-phosphooligonucleotide
Name: single stranded DNA -> 5'-phosphooligonucleotide
Description: Reaction transforming single stranded DNA into 5'-phosphooligonucleotide
Type: state transition
Pathway Components: single stranded DNA - Nfo -> 5'-phosphooligonucleotide
Components:
Function Name Type
product 5'-phosphooligonucleotide simple_molecule
catalyzer Nfo protein
reactant single stranded DNA simple_molecule
acnA_mRNA AcnA
Name: acnA_mRNA -> AcnA
Description: Translation of AcnA
Type: translation
Pathway Components: acnA_mRNA -> AcnA
Components:
Function Name Type
product AcnA protein
reactant acnA_mRNA RNA
AcnA cis-aconitate I-CIT
Name: cis-aconitate -> I-CIT
Description: Reaction transforming cis-aconitate into I-CIT
Type: state transition
Pathway Components: cis-aconitate - AcnA -> I-CIT
Components:
Function Name Type
catalyzer AcnA protein
product I-CIT simple_molecule
reactant cis-aconitate simple_molecule
AcnA citrate cis-aconitate
Name: citrate -> cis-aconitate
Description: Reaction transforming citrate into cis-aconitate
Type: state transition
Pathway Components: citrate - AcnA -> cis-aconitate
Components:
Function Name Type
catalyzer AcnA protein
product cis-aconitate simple_molecule