RegulonDB RegulonDB

RcdA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
CsgG CsgF yagK csgDEFG CsgD csgDEFG_mRNA yagK_mRNA bluF CsgG sulA asr asr_mRNA sulA_mRNA YagK Asr ydeI_mRNA bluF_mRNA BluF CsgE SulA CsgE YdeI CsgA_Ext CsgA RcdA ydeI


Gensor Unit       
Name: RcdA
Classification:
Groups: Signal transduction mechanisms
Cell wall/membrane/envelope biogenesis
Cell cycle control, cell division, chromosome partitioning
Gene Ontology Terms (GO): biological_process GO:0009432 - SOS response
GO:0022610 - biological adhesion
GO:0009785 - blue light signaling pathway
GO:0007049 - cell cycle
GO:0051301 - cell division
GO:0006974 - cellular response to DNA damage stimulus
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cellular_component GO:0009279 - cell outer membrane
GO:0005829 - cytosol
GO:0031246 - intrinsic component of periplasmic side of cell outer membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
GO:0005886 - plasma membrane
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molecular_function GO:0003677 - DNA binding
GO:0001216 - DNA-binding transcription activator activity
GO:0001217 - DNA-binding transcription repressor activity
GO:0071949 - FAD binding
GO:0033613 - activating transcription factor binding
GO:0000986 - bacterial-type cis-regulatory region sequence-specific DNA binding
GO:0009882 - blue light photoreceptor activity
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Components:
  Function Name Type
  protein Asr protein
  protein BluF protein
  simple_molecule CsgA simple_molecule
  simple_molecule CsgA_Ext simple_molecule
  protein CsgD protein
  protein CsgE protein
  complex CsgE-CsgG complex
  protein CsgF protein
  protein CsgG protein
  protein RcdA protein
  protein SulA protein
  protein YagK protein
  protein YdeI protein
  gene asr gene
  RNA asr_mRNA RNA
  gene bluF gene
  RNA bluF_mRNA RNA
  gene csgDEFG gene
  RNA csgDEFG_mRNA RNA
  gene sulA gene
  RNA sulA_mRNA RNA
  gene yagK gene
  RNA yagK_mRNA RNA
  gene ydeI gene
  RNA ydeI_mRNA RNA


Reactions       
Showing 17 reactions
RcdA asr asr_mRNA
Name: asr -> asr_mRNA
Description: Transcription of transcription unit asr. Reaction activation by RcdA.
Type: transcription
Pathway Components: asr - RcdA -> asr_mRNA
Components:
Function Name Type
activator RcdA protein
reactant asr gene
product asr_mRNA RNA
RcdA bluF bluF_mRNA
Name: bluF -> bluF_mRNA
Description: Transcription of transcription unit bluF. Reaction activation by RcdA.
Type: transcription
Pathway Components: bluF - RcdA -> bluF_mRNA
Components:
Function Name Type
activator RcdA protein
reactant bluF gene
product bluF_mRNA RNA
RcdA csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction activation by RcdA.
Type: transcription
Pathway Components: csgDEFG - RcdA -> csgDEFG_mRNA
Components:
Function Name Type
activator RcdA protein
reactant csgDEFG gene
product csgDEFG_mRNA RNA
RcdA ydeI ydeI_mRNA
Name: ydeI -> ydeI_mRNA
Description: Transcription of transcription unit ydeI. Reaction activation by RcdA.
Type: transcription
Pathway Components: ydeI - RcdA -> ydeI_mRNA
Components:
Function Name Type
activator RcdA protein
reactant ydeI gene
product ydeI_mRNA RNA
RcdA sulA sulA_mRNA
Name: sulA -> sulA_mRNA
Description: Transcription of transcription unit sulA. Reaction inhibition by RcdA.
Type: transcription
Pathway Components: sulA - RcdA -> sulA_mRNA
Components:
Function Name Type
inhibitor RcdA protein
reactant sulA gene
product sulA_mRNA RNA
RcdA yagK yagK_mRNA
Name: yagK -> yagK_mRNA
Description: Transcription of transcription unit yagK. Reaction inhibition by RcdA.
Type: transcription
Pathway Components: yagK - RcdA -> yagK_mRNA
Components:
Function Name Type
inhibitor RcdA protein
reactant yagK gene
product yagK_mRNA RNA
yagK_mRNA YagK
Name: yagK_mRNA -> YagK
Description: Translation of YagK
Type: translation
Pathway Components: yagK_mRNA -> YagK
Components:
Function Name Type
product YagK protein
reactant yagK_mRNA RNA
bluF_mRNA BluF
Name: bluF_mRNA -> BluF
Description: Translation of BluF
Type: translation
Pathway Components: bluF_mRNA -> BluF
Components:
Function Name Type
product BluF protein
reactant bluF_mRNA RNA
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type
product CsgD protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type
product CsgE protein
reactant csgDEFG_mRNA RNA
CsgE + CsgG CsgE-CsgG
Name: CsgE + CsgG -> CsgE-CsgG
Description: Reaction transforming CsgE, CsgG into CsgE-CsgG
Type: state transition
Pathway Components: CsgE + CsgG -> CsgE-CsgG
Components:
Function Name Type
reactant CsgE protein
product CsgE-CsgG complex
reactant CsgG protein
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type
product CsgA simple_molecule
reactant CsgA_Ext simple_molecule
catalyzer CsgE-CsgG complex
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type
product CsgF protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type
product CsgG protein
reactant csgDEFG_mRNA RNA
asr_mRNA Asr
Name: asr_mRNA -> Asr
Description: Translation of Asr
Type: translation
Pathway Components: asr_mRNA -> Asr
Components:
Function Name Type
product Asr protein
reactant asr_mRNA RNA
sulA_mRNA SulA
Name: sulA_mRNA -> SulA
Description: Translation of SulA
Type: translation
Pathway Components: sulA_mRNA -> SulA
Components:
Function Name Type
product SulA protein
reactant sulA_mRNA RNA
ydeI_mRNA YdeI
Name: ydeI_mRNA -> YdeI
Description: Translation of YdeI
Type: translation
Pathway Components: ydeI_mRNA -> YdeI
Components:
Function Name Type
product YdeI protein
reactant ydeI_mRNA RNA
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