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RcsAB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
FlhC CsgA [protein] tyrosine phosphate CsgA_Ext CsgG RcsB YjbE yjbEFGH_mRNA YjbH rcsA_mRNA Wzc CsgE YjbF RcsAB FlhD wza-wzb-wzc-wcaAB Wzb Wza yjbE yjbE_mRNA CsgF yjbEFGH CsgE CsgD rcsA csgDEFG RcsA flhDC_mRNA RcsA YjbG WcaB Wza protein tyrosine flhDC WcaA wza-wzb-wzc-wcaAB_mRNA RcsB CsgG FlhC FlhD Wzc phosphate csgDEFG_mRNA


Gensor Unit       
Name: RcsAB
Classification:
Groups: Signal transduction mechanisms
Amino acid transport and metabolism
Cell wall/membrane/envelope biogenesis
Cell cycle control, cell division, chromosome partitioning
Gene Ontology Terms (GO): biological_process GO:0044780 - bacterial-type flagellum assembly
GO:0044781 - bacterial-type flagellum organization
GO:0042710 - biofilm formation
GO:0022610 - biological adhesion
GO:0008643 - carbohydrate transport
GO:0009242 - colanic acid biosynthetic process
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cellular_component GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0005576 - extracellular region
GO:0045203 - integral component of cell outer membrane
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
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molecular_function GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0003677 - DNA binding
GO:0001216 - DNA-binding transcription activator activity
GO:0001217 - DNA-binding transcription repressor activity
GO:0016407 - acetyltransferase activity
GO:0000986 - bacterial-type cis-regulatory region sequence-specific DNA binding
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Components:
  Function Name Type
  simple_molecule CsgA simple_molecule
  simple_molecule CsgA_Ext simple_molecule
  protein CsgD protein
  protein CsgE protein
  complex CsgE-CsgG complex
  protein CsgF protein
  protein CsgG protein
  protein FlhC protein
  protein FlhD protein
  complex FlhD-FlhC complex
  protein RcsA protein
  protein RcsAB protein
  protein RcsB protein
  complex RcsB-RcsA complex
  protein WcaA protein
  protein WcaB protein
  protein Wza protein
  complex Wza-Wzc complex
  protein Wzb protein
  protein Wzc protein
  protein YjbE protein
  protein YjbF protein
  protein YjbG protein
  protein YjbH protein
  simple_molecule [protein] tyrosine phosphate simple_molecule
  gene csgDEFG gene
  RNA csgDEFG_mRNA RNA
  gene flhDC gene
  RNA flhDC_mRNA RNA
  simple_molecule phosphate simple_molecule
  simple_molecule protein tyrosine simple_molecule
  gene rcsA gene
  RNA rcsA_mRNA RNA
  gene wza-wzb-wzc-wcaAB gene
  RNA wza-wzb-wzc-wcaAB_mRNA RNA
  gene yjbE gene
  gene yjbEFGH gene
  RNA yjbEFGH_mRNA RNA
  RNA yjbE_mRNA RNA


Reactions       
Showing 30 reactions
RcsAB rcsA rcsA_mRNA
Name: rcsA -> rcsA_mRNA
Description: Transcription of transcription unit rcsA. Reaction activation by RcsAB.
Type: transcription
Pathway Components: rcsA - RcsAB -> rcsA_mRNA
Components:
Function Name Type
activator RcsAB protein
reactant rcsA gene
product rcsA_mRNA RNA
RcsAB wza-wzb-wzc-wcaAB wza-wzb-wzc-wcaAB_mRNA
Name: wza-wzb-wzc-wcaAB -> wza-wzb-wzc-wcaAB_mRNA
Description: Transcription of transcription unit wza-wzb-wzc-wcaAB. Reaction activation by RcsAB.
Type: transcription
Pathway Components: wza-wzb-wzc-wcaAB - RcsAB -> wza-wzb-wzc-wcaAB_mRNA
Components:
Function Name Type
activator RcsAB protein
reactant wza-wzb-wzc-wcaAB gene
product wza-wzb-wzc-wcaAB_mRNA RNA
RcsAB yjbE yjbE_mRNA
Name: yjbE -> yjbE_mRNA
Description: Transcription of transcription unit yjbE. Reaction activation by RcsAB.
Type: transcription
Pathway Components: yjbE - RcsAB -> yjbE_mRNA
Components:
Function Name Type
activator RcsAB protein
reactant yjbE gene
product yjbE_mRNA RNA
RcsAB yjbEFGH yjbEFGH_mRNA
Name: yjbEFGH -> yjbEFGH_mRNA
Description: Transcription of transcription unit yjbEFGH. Reaction activation by RcsAB.
Type: transcription
Pathway Components: yjbEFGH - RcsAB -> yjbEFGH_mRNA
Components:
Function Name Type
activator RcsAB protein
reactant yjbEFGH gene
product yjbEFGH_mRNA RNA
RcsAB csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction inhibition by RcsAB.
Type: transcription
Pathway Components: csgDEFG - RcsAB -> csgDEFG_mRNA
Components:
Function Name Type
inhibitor RcsAB protein
reactant csgDEFG gene
product csgDEFG_mRNA RNA
RcsAB flhDC flhDC_mRNA
Name: flhDC -> flhDC_mRNA
Description: Transcription of transcription unit flhDC. Reaction inhibition by RcsAB.
Type: transcription
Pathway Components: flhDC - RcsAB -> flhDC_mRNA
Components:
Function Name Type
inhibitor RcsAB protein
reactant flhDC gene
product flhDC_mRNA RNA
yjbE_mRNA YjbE
Name: yjbE_mRNA -> YjbE
Description: Translation of YjbE
Type: translation
Pathway Components: yjbE_mRNA -> YjbE
Components:
Function Name Type
product YjbE protein
reactant yjbE_mRNA RNA
wza-wzb-wzc-wcaAB_mRNA Wza
Name: wza-wzb-wzc-wcaAB_mRNA -> Wza
Description: Translation of Wza
Type: translation
Pathway Components: wza-wzb-wzc-wcaAB_mRNA -> Wza
Components:
Function Name Type
product Wza protein
reactant wza-wzb-wzc-wcaAB_mRNA RNA
Wza + Wzc Wza-Wzc
Name: Wza + Wzc -> Wza-Wzc
Description: Reaction transforming Wza, Wzc into Wza-Wzc
Type: state transition
Pathway Components: Wza + Wzc -> Wza-Wzc
Components:
Function Name Type
reactant Wza protein
product Wza-Wzc complex
reactant Wzc protein
wza-wzb-wzc-wcaAB_mRNA Wzb
Name: wza-wzb-wzc-wcaAB_mRNA -> Wzb
Description: Translation of Wzb
Type: translation
Pathway Components: wza-wzb-wzc-wcaAB_mRNA -> Wzb
Components:
Function Name Type
product Wzb protein
reactant wza-wzb-wzc-wcaAB_mRNA RNA
Wzb [protein] tyrosine phosphate protein tyrosine + phosphate
Name: [protein] tyrosine phosphate -> protein tyrosine + phosphate
Description: Reaction transforming [protein] tyrosine phosphate into protein tyrosine, phosphate
Type: state transition
Pathway Components: [protein] tyrosine phosphate - Wzb -> protein tyrosine + phosphate
Components:
Function Name Type
catalyzer Wzb protein
reactant [protein] tyrosine phosphate simple_molecule
product phosphate simple_molecule
product protein tyrosine simple_molecule
wza-wzb-wzc-wcaAB_mRNA Wzc
Name: wza-wzb-wzc-wcaAB_mRNA -> Wzc
Description: Translation of Wzc
Type: translation
Pathway Components: wza-wzb-wzc-wcaAB_mRNA -> Wzc
Components:
Function Name Type
product Wzc protein
reactant wza-wzb-wzc-wcaAB_mRNA RNA
Wzc protein tyrosine [protein] tyrosine phosphate
Name: protein tyrosine -> [protein] tyrosine phosphate
Description: Reaction transforming protein tyrosine into [protein] tyrosine phosphate
Type: state transition
Pathway Components: protein tyrosine - Wzc -> [protein] tyrosine phosphate
Components:
Function Name Type
catalyzer Wzc protein
product [protein] tyrosine phosphate simple_molecule
reactant protein tyrosine simple_molecule
wza-wzb-wzc-wcaAB_mRNA WcaA
Name: wza-wzb-wzc-wcaAB_mRNA -> WcaA
Description: Translation of WcaA
Type: translation
Pathway Components: wza-wzb-wzc-wcaAB_mRNA -> WcaA
Components:
Function Name Type
product WcaA protein
reactant wza-wzb-wzc-wcaAB_mRNA RNA
wza-wzb-wzc-wcaAB_mRNA WcaB
Name: wza-wzb-wzc-wcaAB_mRNA -> WcaB
Description: Translation of WcaB
Type: translation
Pathway Components: wza-wzb-wzc-wcaAB_mRNA -> WcaB
Components:
Function Name Type
product WcaB protein
reactant wza-wzb-wzc-wcaAB_mRNA RNA
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type
product CsgD protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type
product CsgE protein
reactant csgDEFG_mRNA RNA
CsgE + CsgG CsgE-CsgG
Name: CsgE + CsgG -> CsgE-CsgG
Description: Reaction transforming CsgE, CsgG into CsgE-CsgG
Type: state transition
Pathway Components: CsgE + CsgG -> CsgE-CsgG
Components:
Function Name Type
reactant CsgE protein
product CsgE-CsgG complex
reactant CsgG protein
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type
product CsgA simple_molecule
reactant CsgA_Ext simple_molecule
catalyzer CsgE-CsgG complex
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type
product CsgF protein
reactant csgDEFG_mRNA RNA
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type
product CsgG protein
reactant csgDEFG_mRNA RNA
yjbEFGH_mRNA YjbE
Name: yjbEFGH_mRNA -> YjbE
Description: Translation of YjbE
Type: translation
Pathway Components: yjbEFGH_mRNA -> YjbE
Components:
Function Name Type
product YjbE protein
reactant yjbEFGH_mRNA RNA
yjbEFGH_mRNA YjbF
Name: yjbEFGH_mRNA -> YjbF
Description: Translation of YjbF
Type: translation
Pathway Components: yjbEFGH_mRNA -> YjbF
Components:
Function Name Type
product YjbF protein
reactant yjbEFGH_mRNA RNA
yjbEFGH_mRNA YjbG
Name: yjbEFGH_mRNA -> YjbG
Description: Translation of YjbG
Type: translation
Pathway Components: yjbEFGH_mRNA -> YjbG
Components:
Function Name Type
product YjbG protein
reactant yjbEFGH_mRNA RNA
yjbEFGH_mRNA YjbH
Name: yjbEFGH_mRNA -> YjbH
Description: Translation of YjbH
Type: translation
Pathway Components: yjbEFGH_mRNA -> YjbH
Components:
Function Name Type
product YjbH protein
reactant yjbEFGH_mRNA RNA
rcsA_mRNA RcsA
Name: rcsA_mRNA -> RcsA
Description: Translation of RcsA
Type: translation
Pathway Components: rcsA_mRNA -> RcsA
Components:
Function Name Type
product RcsA protein
reactant rcsA_mRNA RNA
RcsA + RcsB RcsB-RcsA
Name: RcsA + RcsB -> RcsB-RcsA
Description: Reaction transforming RcsA, RcsB into RcsB-RcsA
Type: state transition
Pathway Components: RcsA + RcsB -> RcsB-RcsA
Components:
Function Name Type
reactant RcsA protein
reactant RcsB protein
product RcsB-RcsA complex
flhDC_mRNA FlhD
Name: flhDC_mRNA -> FlhD
Description: Translation of FlhD
Type: translation
Pathway Components: flhDC_mRNA -> FlhD
Components:
Function Name Type
product FlhD protein
reactant flhDC_mRNA RNA
FlhC + FlhD FlhD-FlhC
Name: FlhC + FlhD -> FlhD-FlhC
Description: Reaction transforming FlhC, FlhD into FlhD-FlhC
Type: state transition
Pathway Components: FlhC + FlhD -> FlhD-FlhC
Components:
Function Name Type
reactant FlhC protein
reactant FlhD protein
product FlhD-FlhC complex
flhDC_mRNA FlhC
Name: flhDC_mRNA -> FlhC
Description: Translation of FlhC
Type: translation
Pathway Components: flhDC_mRNA -> FlhC
Components:
Function Name Type
product FlhC protein
reactant flhDC_mRNA RNA



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