RegulonDB RegulonDB

OxyR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GSSG FhuF uxuAB S-sulfocysteine ybjC-nfsA-rimK-ybjN_mRNA protein with incorrect disulfide bonds ahpCF ahpCF_mRNA gor_mRNA Fur SufB Fe+2 ammonium [protein] C-terminal L-glutamate dsbG_mRNA gluconate Flu protoporphyrin perhydrol protein with reduced SH groups uxuAB_mRNA trxC_mRNA mntH DsbG cysteine grxA_mRNA 2-keto-3-deoxygluconate AhpF reduced nitroaromatic compound katG_mRNA vitamin K2 gor ychF_mRNA Gor sulfite Mn(II) mntH_mRNA oxyS_mRNA menaquinol oxyR_mRNA ubiquinone unsulfurated [sulfur donor] oxygen fructuronate fhuF_mRNA Uof UxuB isrC-flu_mRNA isrC-flu SufC SufD trxC selenide dsbG NH2OH mannonate hcp-hcr_mRNA Hcr hemH TrxC sufABCDSE_mRNA uof-fur_mRNA SufE KatG selenocysteine SufS ybjC-nfsA-rimK-ybjN protein cysteines hemH_mRNA dps_mRNA fhuF AhpC RNA:IS102 3-sulfinoalanine AhpF alanine gntP L-glutamate Mn(II)_Ext acceptors ROOH ubiquinol oxidized hybrid-cluster protein gluconate_Ext YbjC OxyR ccp Ccp dps sufABCDSE ccp_mRNA pyruvate YbjN SufC PoxB CO2 oxyS YchF Hcp ychF phosphate RimK uof-fur A(H2) SufB gntP_mRNA SufA acetate glutathione protein with oxidized disulfide bonds AhpC hcp-hcr-poxB katG protoheme IX [protein] alpha-L-glu-alpha-L-glu Dps reduced glutaredoxin grxA sulfurated sulfur donor oxyR UxuA Fe+2_Ext hcp-hcr acetoin GntP hcp-hcr-poxB_mRNA NfsA fructuronate_Ext HemH oxidized glutaredoxin RNA:OxyS GrxA reduced hybrid-cluster protein MntH protein with correct disulfide bonds ethanal [L-cysteine desulfurase] L-cysteine persulfide SufD oxidized nitroaromatic compound alcohol alanine pyruvate acceptors A(H2)


Gensor Unit       
Name: OxyR
Classification:
Groups: Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Translation, ribosomal structure and biogenesis
Gene Ontology Terms (GO): biological_process GO:0018410 - C-terminal protein amino acid modification
GO:0046177 - D-gluconate catabolic process
GO:0019521 - D-gluconate metabolic process
GO:0042840 - D-glucuronate catabolic process
GO:0009432 - SOS response
GO:0019645 - anaerobic electron transport chain
Read more >
cellular_component GO:0009321 - alkyl hydroperoxide reductase complex
GO:0009279 - cell outer membrane
GO:0009986 - cell surface
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0005576 - extracellular region
GO:0016021 - integral component of membrane
Read more >
molecular_function GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0003677 - DNA binding
GO:0001216 - DNA-binding transcription activator activity
GO:0003700 - DNA-binding transcription factor activity
Read more >
Components:
  Function Name Type
  simple_molecule 2-keto-3-deoxygluconate simple_molecule
  simple_molecule 3-sulfinoalanine simple_molecule
  simple_molecule A(H2) simple_molecule
  protein AhpC protein
  complex AhpC-AhpF complex
  protein AhpF protein
  simple_molecule CO2 simple_molecule
  protein Ccp protein
  protein Dps protein
  protein DsbG protein
  simple_molecule Fe+2 simple_molecule
  simple_molecule Fe+2_Ext simple_molecule
  protein FhuF protein
  protein Flu protein
  protein Fur protein
  simple_molecule GSSG simple_molecule
  protein GntP protein
  protein Gor protein
  protein GrxA protein
  protein Hcp protein
  protein Hcr protein
  protein HemH protein
  protein KatG protein
  simple_molecule L-glutamate simple_molecule
  simple_molecule Mn(II) simple_molecule
  simple_molecule Mn(II)_Ext simple_molecule
  protein MntH protein
  simple_molecule NH2OH simple_molecule
  protein NfsA protein
  protein OxyR protein
  protein PoxB protein
  protein RNA:IS102 protein
  protein RNA:OxyS protein
  simple_molecule ROOH simple_molecule
  protein RimK protein
  simple_molecule S-sulfocysteine simple_molecule
  protein SufA protein
  protein SufB protein
  complex SufB-SufC-SufD complex
  protein SufC protein
  protein SufD protein
  protein SufE protein
  protein SufS protein
  protein TrxC protein
  protein Uof protein
  protein UxuA protein
  protein UxuB protein
  protein YbjC protein
  protein YbjN protein
  protein YchF protein
  simple_molecule [L-cysteine desulfurase] L-cysteine persulfide simple_molecule
  simple_molecule [protein] α-L-glu-α-L-glu simple_molecule
  simple_molecule [protein] C-terminal L-glutamate simple_molecule
  simple_molecule acceptors simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule acetoin simple_molecule
  gene ahpCF gene
  RNA ahpCF_mRNA RNA
  simple_molecule alanine simple_molecule
  simple_molecule alcohol simple_molecule
  simple_molecule ammonium simple_molecule
  gene ccp gene
  RNA ccp_mRNA RNA
  simple_molecule cysteine simple_molecule
  gene dps gene
  RNA dps_mRNA RNA
  gene dsbG gene
  RNA dsbG_mRNA RNA
  simple_molecule ethanal simple_molecule
  gene fhuF gene
  RNA fhuF_mRNA RNA
  simple_molecule fructuronate simple_molecule
  simple_molecule fructuronate_Ext simple_molecule
  simple_molecule gluconate simple_molecule
  simple_molecule gluconate_Ext simple_molecule
  simple_molecule glutathione simple_molecule
  gene gntP gene
  RNA gntP_mRNA RNA
  gene gor gene
  RNA gor_mRNA RNA
  gene grxA gene
  RNA grxA_mRNA RNA
  gene hcp-hcr gene
  gene hcp-hcr-poxB gene
  RNA hcp-hcr-poxB_mRNA RNA
  RNA hcp-hcr_mRNA RNA
  gene hemH gene
  RNA hemH_mRNA RNA
  gene isrC-flu gene
  RNA isrC-flu_mRNA RNA
  gene katG gene
  RNA katG_mRNA RNA
  simple_molecule mannonate simple_molecule
  simple_molecule menaquinol simple_molecule
  gene mntH gene
  RNA mntH_mRNA RNA
  simple_molecule oxidized glutaredoxin simple_molecule
  simple_molecule oxidized hybrid-cluster protein simple_molecule
  simple_molecule oxidized nitroaromatic compound simple_molecule
  gene oxyR gene
  RNA oxyR_mRNA RNA
  gene oxyS gene
  RNA oxyS_mRNA RNA
  simple_molecule oxygen simple_molecule
  simple_molecule perhydrol simple_molecule
  simple_molecule phosphate simple_molecule
  simple_molecule protein cysteines simple_molecule
  simple_molecule protein with correct disulfide bonds simple_molecule
  simple_molecule protein with incorrect disulfide bonds simple_molecule
  simple_molecule protein with oxidized disulfide bonds simple_molecule
  simple_molecule protein with reduced SH groups simple_molecule
  simple_molecule protoheme IX simple_molecule
  simple_molecule protoporphyrin simple_molecule
  simple_molecule pyruvate simple_molecule
  simple_molecule reduced glutaredoxin simple_molecule
  simple_molecule reduced hybrid-cluster protein simple_molecule
  simple_molecule reduced nitroaromatic compound simple_molecule
  simple_molecule selenide simple_molecule
  simple_molecule selenocysteine simple_molecule
  gene sufABCDSE gene
  RNA sufABCDSE_mRNA RNA
  simple_molecule sulfite simple_molecule
  simple_molecule sulfurated sulfur donor simple_molecule
  gene trxC gene
  RNA trxC_mRNA RNA
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinone simple_molecule
  simple_molecule unsulfurated [sulfur donor] simple_molecule
  gene uof-fur gene
  RNA uof-fur_mRNA RNA
  gene uxuAB gene
  RNA uxuAB_mRNA RNA
  simple_molecule vitamin K2 simple_molecule
  gene ybjC-nfsA-rimK-ybjN gene
  RNA ybjC-nfsA-rimK-ybjN_mRNA RNA
  gene ychF gene
  RNA ychF_mRNA RNA


Reactions       
Showing 87 reactions
OxyR ahpCF ahpCF_mRNA
Name: ahpCF -> ahpCF_mRNA
Description: Transcription of transcription unit ahpCF. Reaction activation by OxyR.
Type: transcription
Pathway Components: ahpCF - OxyR -> ahpCF_mRNA
Components:
Function Name Type
activator OxyR protein
reactant ahpCF gene
product ahpCF_mRNA RNA
OxyR ccp ccp_mRNA
Name: ccp -> ccp_mRNA
Description: Transcription of transcription unit ccp. Reaction activation by OxyR.
Type: transcription
Pathway Components: ccp - OxyR -> ccp_mRNA
Components:
Function Name Type
activator OxyR protein
reactant ccp gene
product ccp_mRNA RNA
OxyR dps dps_mRNA
Name: dps -> dps_mRNA
Description: Transcription of transcription unit dps. Reaction activation by OxyR.
Type: transcription
Pathway Components: dps - OxyR -> dps_mRNA
Components:
Function Name Type
activator OxyR protein
reactant dps gene
product dps_mRNA RNA
OxyR dsbG dsbG_mRNA
Name: dsbG -> dsbG_mRNA
Description: Transcription of transcription unit dsbG. Reaction activation by OxyR.
Type: transcription
Pathway Components: dsbG - OxyR -> dsbG_mRNA
Components:
Function Name Type
activator OxyR protein
reactant dsbG gene
product dsbG_mRNA RNA
OxyR gor gor_mRNA
Name: gor -> gor_mRNA
Description: Transcription of transcription unit gor. Reaction activation by OxyR.
Type: transcription
Pathway Components: gor - OxyR -> gor_mRNA
Components:
Function Name Type
activator OxyR protein
reactant gor gene
product gor_mRNA RNA
OxyR grxA grxA_mRNA
Name: grxA -> grxA_mRNA
Description: Transcription of transcription unit grxA. Reaction activation by OxyR.
Type: transcription
Pathway Components: grxA - OxyR -> grxA_mRNA
Components:
Function Name Type
activator OxyR protein
reactant grxA gene
product grxA_mRNA RNA
OxyR hcp-hcr hcp-hcr_mRNA
Name: hcp-hcr -> hcp-hcr_mRNA
Description: Transcription of transcription unit hcp-hcr. Reaction activation by OxyR.
Type: transcription
Pathway Components: hcp-hcr - OxyR -> hcp-hcr_mRNA
Components:
Function Name Type
activator OxyR protein
reactant hcp-hcr gene
product hcp-hcr_mRNA RNA
OxyR hcp-hcr-poxB hcp-hcr-poxB_mRNA
Name: hcp-hcr-poxB -> hcp-hcr-poxB_mRNA
Description: Transcription of transcription unit hcp-hcr-poxB. Reaction activation by OxyR.
Type: transcription
Pathway Components: hcp-hcr-poxB - OxyR -> hcp-hcr-poxB_mRNA
Components:
Function Name Type
activator OxyR protein
reactant hcp-hcr-poxB gene
product hcp-hcr-poxB_mRNA RNA
OxyR hemH hemH_mRNA
Name: hemH -> hemH_mRNA
Description: Transcription of transcription unit hemH. Reaction activation by OxyR.
Type: transcription
Pathway Components: hemH - OxyR -> hemH_mRNA
Components:
Function Name Type
activator OxyR protein
reactant hemH gene
product hemH_mRNA RNA
OxyR katG katG_mRNA
Name: katG -> katG_mRNA
Description: Transcription of transcription unit katG. Reaction activation by OxyR.
Type: transcription
Pathway Components: katG - OxyR -> katG_mRNA
Components:
Function Name Type
activator OxyR protein
reactant katG gene
product katG_mRNA RNA
OxyR mntH mntH_mRNA
Name: mntH -> mntH_mRNA
Description: Transcription of transcription unit mntH. Reaction activation by OxyR.
Type: transcription
Pathway Components: mntH - OxyR -> mntH_mRNA
Components:
Function Name Type
activator OxyR protein
reactant mntH gene
product mntH_mRNA RNA
OxyR oxyS oxyS_mRNA
Name: oxyS -> oxyS_mRNA
Description: Transcription of transcription unit oxyS. Reaction activation by OxyR.
Type: transcription
Pathway Components: oxyS - OxyR -> oxyS_mRNA
Components:
Function Name Type
activator OxyR protein
reactant oxyS gene
product oxyS_mRNA RNA
OxyR sufABCDSE sufABCDSE_mRNA
Name: sufABCDSE -> sufABCDSE_mRNA
Description: Transcription of transcription unit sufABCDSE. Reaction activation by OxyR.
Type: transcription
Pathway Components: sufABCDSE - OxyR -> sufABCDSE_mRNA
Components:
Function Name Type
activator OxyR protein
reactant sufABCDSE gene
product sufABCDSE_mRNA RNA
OxyR trxC trxC_mRNA
Name: trxC -> trxC_mRNA
Description: Transcription of transcription unit trxC. Reaction activation by OxyR.
Type: transcription
Pathway Components: trxC - OxyR -> trxC_mRNA
Components:
Function Name Type
activator OxyR protein
reactant trxC gene
product trxC_mRNA RNA
OxyR uof-fur uof-fur_mRNA
Name: uof-fur -> uof-fur_mRNA
Description: Transcription of transcription unit uof-fur. Reaction activation by OxyR.
Type: transcription
Pathway Components: uof-fur - OxyR -> uof-fur_mRNA
Components:
Function Name Type
activator OxyR protein
reactant uof-fur gene
product uof-fur_mRNA RNA
OxyR fhuF fhuF_mRNA
Name: fhuF -> fhuF_mRNA
Description: Transcription of transcription unit fhuF. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: fhuF - OxyR -> fhuF_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant fhuF gene
product fhuF_mRNA RNA
OxyR gntP gntP_mRNA
Name: gntP -> gntP_mRNA
Description: Transcription of transcription unit gntP. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: gntP - OxyR -> gntP_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant gntP gene
product gntP_mRNA RNA
OxyR isrC-flu isrC-flu_mRNA
Name: isrC-flu -> isrC-flu_mRNA
Description: Transcription of transcription unit isrC-flu. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: isrC-flu - OxyR -> isrC-flu_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant isrC-flu gene
product isrC-flu_mRNA RNA
OxyR oxyR oxyR_mRNA
Name: oxyR -> oxyR_mRNA
Description: Transcription of transcription unit oxyR. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: oxyR - OxyR -> oxyR_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant oxyR gene
product oxyR_mRNA RNA
OxyR uxuAB uxuAB_mRNA
Name: uxuAB -> uxuAB_mRNA
Description: Transcription of transcription unit uxuAB. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: uxuAB - OxyR -> uxuAB_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant uxuAB gene
product uxuAB_mRNA RNA
OxyR ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: ybjC-nfsA-rimK-ybjN - OxyR -> ybjC-nfsA-rimK-ybjN_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant ybjC-nfsA-rimK-ybjN gene
product ybjC-nfsA-rimK-ybjN_mRNA RNA
OxyR ychF ychF_mRNA
Name: ychF -> ychF_mRNA
Description: Transcription of transcription unit ychF. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: ychF - OxyR -> ychF_mRNA
Components:
Function Name Type
inhibitor OxyR protein
reactant ychF gene
product ychF_mRNA RNA
oxyR_mRNA OxyR
Name: oxyR_mRNA -> OxyR
Description: Translation of OxyR
Type: translation
Pathway Components: oxyR_mRNA -> OxyR
Components:
Function Name Type
product OxyR protein
reactant oxyR_mRNA RNA
ahpCF_mRNA AhpC
Name: ahpCF_mRNA -> AhpC
Description: Translation of AhpC
Type: translation
Pathway Components: ahpCF_mRNA -> AhpC
Components:
Function Name Type
product AhpC protein
reactant ahpCF_mRNA RNA
AhpF + AhpC AhpC-AhpF
Name: AhpF + AhpC -> AhpC-AhpF
Description: Reaction transforming AhpF, AhpC into AhpC-AhpF
Type: state transition
Pathway Components: AhpF + AhpC -> AhpC-AhpF
Components:
Function Name Type
reactant AhpC protein
product AhpC-AhpF complex
reactant AhpF protein
AhpC-AhpF ROOH alcohol
Name: ROOH -> alcohol
Description: Reaction transforming ROOH into alcohol
Type: state transition
Pathway Components: ROOH - AhpC-AhpF -> alcohol
Components:
Function Name Type
catalyzer AhpC-AhpF complex
reactant ROOH simple_molecule
product alcohol simple_molecule
ahpCF_mRNA AhpF
Name: ahpCF_mRNA -> AhpF
Description: Translation of AhpF
Type: translation
Pathway Components: ahpCF_mRNA -> AhpF
Components:
Function Name Type
product AhpF protein
reactant ahpCF_mRNA RNA
oxyS_mRNA RNA:OxyS
Name: oxyS_mRNA -> RNA:OxyS
Description: Translation of RNA:OxyS
Type: translation
Pathway Components: oxyS_mRNA -> RNA:OxyS
Components:
Function Name Type
product RNA:OxyS protein
reactant oxyS_mRNA RNA
ychF_mRNA YchF
Name: ychF_mRNA -> YchF
Description: Translation of YchF
Type: translation
Pathway Components: ychF_mRNA -> YchF
Components:
Function Name Type
product YchF protein
reactant ychF_mRNA RNA
fhuF_mRNA FhuF
Name: fhuF_mRNA -> FhuF
Description: Translation of FhuF
Type: translation
Pathway Components: fhuF_mRNA -> FhuF
Components:
Function Name Type
product FhuF protein
reactant fhuF_mRNA RNA
dps_mRNA Dps
Name: dps_mRNA -> Dps
Description: Translation of Dps
Type: translation
Pathway Components: dps_mRNA -> Dps
Components:
Function Name Type
product Dps protein
reactant dps_mRNA RNA
uof-fur_mRNA Uof
Name: uof-fur_mRNA -> Uof
Description: Translation of Uof
Type: translation
Pathway Components: uof-fur_mRNA -> Uof
Components:
Function Name Type
product Uof protein
reactant uof-fur_mRNA RNA
uof-fur_mRNA Fur
Name: uof-fur_mRNA -> Fur
Description: Translation of Fur
Type: translation
Pathway Components: uof-fur_mRNA -> Fur
Components:
Function Name Type
product Fur protein
reactant uof-fur_mRNA RNA
gor_mRNA Gor
Name: gor_mRNA -> Gor
Description: Translation of Gor
Type: translation
Pathway Components: gor_mRNA -> Gor
Components:
Function Name Type
product Gor protein
reactant gor_mRNA RNA
GSSG Gor GSSG glutathione
Name: GSSG -> glutathione
Description: Reaction transforming GSSG into glutathione
Type: state transition
Pathway Components: GSSG - Gor - GSSG -> glutathione
Components:
Function Name Type
inhibitor GSSG simple_molecule
reactant GSSG simple_molecule
catalyzer Gor protein
product glutathione simple_molecule
hemH_mRNA HemH
Name: hemH_mRNA -> HemH
Description: Translation of HemH
Type: translation
Pathway Components: hemH_mRNA -> HemH
Components:
Function Name Type
product HemH protein
reactant hemH_mRNA RNA
HemH protoheme IX protoporphyrin + Fe+2
Name: protoheme IX -> protoporphyrin + Fe+2
Description: Reaction transforming protoheme IX into protoporphyrin, Fe+2
Type: state transition
Pathway Components: protoheme IX - HemH -> protoporphyrin + Fe+2
Components:
Function Name Type
product Fe+2 simple_molecule
catalyzer HemH protein
reactant protoheme IX simple_molecule
product protoporphyrin simple_molecule
sufABCDSE_mRNA SufA
Name: sufABCDSE_mRNA -> SufA
Description: Translation of SufA
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufA
Components:
Function Name Type
product SufA protein
reactant sufABCDSE_mRNA RNA
sufABCDSE_mRNA SufB
Name: sufABCDSE_mRNA -> SufB
Description: Translation of SufB
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufB
Components:
Function Name Type
product SufB protein
reactant sufABCDSE_mRNA RNA
SufC + SufB + SufD SufB-SufC-SufD
Name: SufC + SufB + SufD -> SufB-SufC-SufD
Description: Reaction transforming SufC, SufB, SufD into SufB-SufC-SufD
Type: state transition
Pathway Components: SufC + SufB + SufD -> SufB-SufC-SufD
Components:
Function Name Type
reactant SufB protein
product SufB-SufC-SufD complex
reactant SufC protein
reactant SufD protein
sufABCDSE_mRNA SufC
Name: sufABCDSE_mRNA -> SufC
Description: Translation of SufC
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufC
Components:
Function Name Type
product SufC protein
reactant sufABCDSE_mRNA RNA
sufABCDSE_mRNA SufD
Name: sufABCDSE_mRNA -> SufD
Description: Translation of SufD
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufD
Components:
Function Name Type
product SufD protein
reactant sufABCDSE_mRNA RNA
sufABCDSE_mRNA SufS
Name: sufABCDSE_mRNA -> SufS
Description: Translation of SufS
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufS
Components:
Function Name Type
product SufS protein
reactant sufABCDSE_mRNA RNA
SufS unsulfurated [sulfur donor] + cysteine sulfurated sulfur donor + alanine
Name: unsulfurated [sulfur donor] + cysteine -> sulfurated sulfur donor + alanine
Description: Reaction transforming unsulfurated [sulfur donor], cysteine into sulfurated sulfur donor, alanine
Type: state transition
Pathway Components: unsulfurated [sulfur donor] + cysteine - SufS -> sulfurated sulfur donor + alanine
Components:
Function Name Type
catalyzer SufS protein
product alanine simple_molecule
reactant cysteine simple_molecule
product sulfurated sulfur donor simple_molecule
reactant unsulfurated [sulfur donor] simple_molecule
SufS protein cysteines + cysteine Products
Name: protein cysteines + cysteine -> [L-cysteine desulfurase] L-cysteine persulfide + alanine
Description: Reaction transforming protein cysteines, cysteine into [L-cysteine desulfurase] L-cysteine persulfide, alanine
Type: state transition
Pathway Components: protein cysteines + cysteine - SufS -> [L-cysteine desulfurase] L-cysteine persulfide + alanine
Components:
Function Name Type
catalyzer SufS protein
product [L-cysteine desulfurase] L-cysteine persulfide simple_molecule
product alanine simple_molecule
reactant cysteine simple_molecule
reactant protein cysteines simple_molecule
SufS Reactants sulfurated sulfur donor + protein cysteines
Name: [L-cysteine desulfurase] L-cysteine persulfide + unsulfurated [sulfur donor] -> sulfurated sulfur donor + protein cysteines
Description: Reaction transforming [L-cysteine desulfurase] L-cysteine persulfide, unsulfurated [sulfur donor] into sulfurated sulfur donor, protein cysteines
Type: state transition
Pathway Components: [L-cysteine desulfurase] L-cysteine persulfide + unsulfurated [sulfur donor] - SufS -> sulfurated sulfur donor + protein cysteines
Components:
Function Name Type
catalyzer SufS protein
reactant [L-cysteine desulfurase] L-cysteine persulfide simple_molecule
product protein cysteines simple_molecule
product sulfurated sulfur donor simple_molecule
reactant unsulfurated [sulfur donor] simple_molecule
SufS pyruvate 3-sulfinoalanine alanine + sulfite
Name: 3-sulfinoalanine -> alanine + sulfite
Description: Reaction transforming 3-sulfinoalanine into alanine, sulfite
Type: state transition
Pathway Components: 3-sulfinoalanine - SufS - pyruvate -> alanine + sulfite
Components:
Function Name Type
reactant 3-sulfinoalanine simple_molecule
catalyzer SufS protein
product alanine simple_molecule
inhibitor pyruvate simple_molecule
product sulfite simple_molecule
SufS selenocysteine + A(H2) acceptors + selenide + alanine
Name: selenocysteine + A(H2) -> acceptors + selenide + alanine
Description: Reaction transforming selenocysteine, A(H2) into acceptors, selenide , alanine
Type: state transition
Pathway Components: selenocysteine + A(H2) - SufS -> acceptors + selenide + alanine
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer SufS protein
product acceptors simple_molecule
product alanine simple_molecule
product selenide simple_molecule
reactant selenocysteine simple_molecule
sufABCDSE_mRNA SufE
Name: sufABCDSE_mRNA -> SufE
Description: Translation of SufE
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufE
Components:
Function Name Type
product SufE protein
reactant sufABCDSE_mRNA RNA
ccp_mRNA Ccp
Name: ccp_mRNA -> Ccp
Description: Translation of Ccp
Type: translation
Pathway Components: ccp_mRNA -> Ccp
Components:
Function Name Type
product Ccp protein
reactant ccp_mRNA RNA
Ccp menaquinol + perhydrol vitamin K2
Name: menaquinol + perhydrol -> vitamin K2
Description: Reaction transforming menaquinol, perhydrol into vitamin K2
Type: state transition
Pathway Components: menaquinol + perhydrol - Ccp -> vitamin K2
Components:
Function Name Type
catalyzer Ccp protein
reactant menaquinol simple_molecule
reactant perhydrol simple_molecule
product vitamin K2 simple_molecule
mntH_mRNA MntH
Name: mntH_mRNA -> MntH
Description: Translation of MntH
Type: translation
Pathway Components: mntH_mRNA -> MntH
Components:
Function Name Type
product MntH protein
reactant mntH_mRNA RNA
MntH Fe+2_Ext Fe+2
Name: Fe+2_Ext -> Fe+2
Description: Transport of Fe+2_Ext through a bacterial membrane, leading to the presence of Fe+2 inside the cell.
Type: transport
Pathway Components: Fe+2_Ext - MntH -> Fe+2
Components:
Function Name Type
product Fe+2 simple_molecule
reactant Fe+2_Ext simple_molecule
catalyzer MntH protein
MntH Mn(II)_Ext Mn(II)
Name: Mn(II)_Ext -> Mn(II)
Description: Transport of Mn(II)_Ext through a bacterial membrane, leading to the presence of Mn(II) inside the cell.
Type: transport
Pathway Components: Mn(II)_Ext - MntH -> Mn(II)
Components:
Function Name Type
product Mn(II) simple_molecule
reactant Mn(II)_Ext simple_molecule
catalyzer MntH protein
dsbG_mRNA DsbG
Name: dsbG_mRNA -> DsbG
Description: Translation of DsbG
Type: translation
Pathway Components: dsbG_mRNA -> DsbG
Components:
Function Name Type
product DsbG protein
reactant dsbG_mRNA RNA
DsbG protein with incorrect disulfide bonds protein with correct disulfide bonds
Name: protein with incorrect disulfide bonds -> protein with correct disulfide bonds
Description: Reaction transforming protein with incorrect disulfide bonds into protein with correct disulfide bonds
Type: state transition
Pathway Components: protein with incorrect disulfide bonds - DsbG -> protein with correct disulfide bonds
Components:
Function Name Type
catalyzer DsbG protein
product protein with correct disulfide bonds simple_molecule
reactant protein with incorrect disulfide bonds simple_molecule
DsbG protein with reduced SH groups protein with oxidized disulfide bonds
Name: protein with reduced SH groups -> protein with oxidized disulfide bonds
Description: Reaction transforming protein with reduced SH groups into protein with oxidized disulfide bonds
Type: state transition
Pathway Components: protein with reduced SH groups - DsbG -> protein with oxidized disulfide bonds
Components:
Function Name Type
catalyzer DsbG protein
product protein with oxidized disulfide bonds simple_molecule
reactant protein with reduced SH groups simple_molecule
gntP_mRNA GntP
Name: gntP_mRNA -> GntP
Description: Translation of GntP
Type: translation
Pathway Components: gntP_mRNA -> GntP
Components:
Function Name Type
product GntP protein
reactant gntP_mRNA RNA