RegulonDB RegulonDB

MarA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
AcrF nfsB_mRNA MacB purA_mRNA MarR mlaFEDCB mlaFEDCB_mRNA AcrA sodA_mRNA xseA chenodiol PqiB macrolide antibiotic Rob acetate TolC enterobactin fumarate oxidized nitroaromatic compound oxidized ferredoxin fpr_mRNA AcrD YncE Fpr yncE poxB_mRNA This Gensor Unit is not yet available zwf InaA zwf_mRNA malate 5'-ribonucleotide L-glutamate XseB AcrB ubiquinol ybjC-nfsA-rimK-ybjN CMP-Kdo MarB EmrY AcrE glycolate [protein] alpha-L-glu-alpha-L-glu RNA:MicF hdeAB-yhiD_mRNA lactate [protein] C-terminal L-glutamate acrAB This Gensor Unit is not yet available marRAB oxygen aldA_mRNA yncE_mRNA drug_Ext TolC drug EmrK Slp AcrZ acrZ macrolide antibiotic_Ext AcrA EmrY NfsA AldA chenodiol_Ext tetrahydropteridine MlaE YgiC rob SodA MacA EmrA inaA_mRNA hexane DecR nfsB XseA MlaB glutamate-semialdehyde citrate single stranded DNA caprate_Ext AcrF MdtF pqiABC guanosine-diphosphate enterobactin_Ext slp-dctR_mRNA TolC PurA MdtB proline glycoaldehyde MdtB acrAB_mRNA MlaE oligonucleotide(n) DctR MlaF WaaZ AcrD NfsB superoxide MdtC glucose-6-P MdtF MdtE MlaF putA_mRNA CO2 decR xseA_mRNA TolC MdtA deoxycholate_Ext hexane_Ext This Gensor Unit is not yet available acriflavine glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate 6-phosphogluconolactone acriflavine_Ext Nfo poxB RimK PoxB YhiD (Kdo)2-lipid IVA AcrE ethanal XseA HdeA MlaD PutA YgiA caprate TolC AcnA guanosine-triphosphate EmrK marRAB_mRNA sodA MacA putA This Gensor Unit is not yet available YbjC acnA_mRNA PqiC aspartate ubiquinone purA acnA deoxycholate TolC FumC AcrA TolC glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate cis-aconitate adenylo-succinate KDOIII-lipopolysaccharide MdtC pqiABC_mRNA decR_mRNA PqiA AcrB 5'-phosphooligonucleotide nfo_mRNA XseB rob_mRNA EmrB reduced nitroaromatic compound MarA This Gensor Unit is not yet available acrZ_mRNA micF_mRNA TolC MdtA MdtE pyrroline 5-carboxylate YgiB EmrA nfo MlaC WaaY 6,7-dihydropteridine This Gensor Unit is not yet available MlaB inaA lactaldehyde phosphate acetoin MlaD pyruvate MacB HdeB TolC Zwf hdeAB-yhiD cytidylate ybjC-nfsA-rimK-ybjN_mRNA YbjN slp-dctR novobiocin fpr reduced ferredoxin perhydrol I-CIT 5'-IMP novobiocin_Ext EmrB micF aldA


Gensor Unit       
Name: MarA
Classification:
Groups: General function prediction only
Inorganic ion transport and metabolism
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Replication, recombination and repair
Signal transduction mechanisms
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Nucleotide transport and metabolism
Translation, ribosomal structure and biogenesis
Gene Ontology Terms (GO): biological_process GO:0044208 - 'de novo' AMP biosynthetic process
GO:0046256 - 2,4,6-trinitrotoluene catabolic process
GO:0018410 - C-terminal protein amino acid modification
GO:0006308 - DNA catabolic process
GO:0006281 - DNA repair
GO:0046040 - IMP metabolic process
Read more >
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:1990196 - MacAB-TolC complex
GO:0036406 - anchored component of periplasmic side of cell outer membrane
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0009898 - cytoplasmic side of plasma membrane
GO:0005829 - cytosol
Read more >
molecular_function GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0004155 - 6,7-dihydropteridine reductase activity
GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0003677 - DNA binding
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity
Read more >
Components:
  Function Name Type
  simple_molecule (Kdo)2-lipid IVA simple_molecule
  simple_molecule 5'-IMP simple_molecule
  simple_molecule 5'-phosphooligonucleotide simple_molecule
  simple_molecule 5'-ribonucleotide simple_molecule
  simple_molecule 6,7-dihydropteridine simple_molecule
  simple_molecule 6-phosphogluconolactone simple_molecule
  protein AcnA protein
  protein AcrA protein
  complex AcrA-TolC-AcrB complex
  protein AcrB protein
  protein AcrD protein
  complex AcrD-AcrA-TolC complex
  protein AcrE protein
  complex AcrE-AcrF-TolC complex
  protein AcrF protein
  protein AcrZ protein
  protein AldA protein
  simple_molecule CMP-Kdo simple_molecule
  simple_molecule CO2 simple_molecule
  protein DctR protein
  protein DecR protein
  protein EmrA protein
  complex EmrA-EmrB-TolC complex
  protein EmrB protein
  protein EmrK protein
  complex EmrK-EmrY-TolC complex
  protein EmrY protein
  protein Fpr protein
  protein FumC protein
  protein HdeA protein
  protein HdeB protein
  simple_molecule I-CIT simple_molecule
  protein InaA protein
  simple_molecule KDOIII-lipopolysaccharide simple_molecule
  simple_molecule L-glutamate simple_molecule
  protein MacA protein
  protein MacB protein
  protein MarA protein
  protein MarB protein
  protein MarR protein
  protein MdtA protein
  protein MdtB protein
  protein MdtC protein
  protein MdtE protein
  protein MdtF protein
  protein MlaB protein
  complex MlaB-MlaD-MlaE-MlaF complex
  protein MlaC protein
  protein MlaD protein
  protein MlaE protein
  protein MlaF protein
  protein Nfo protein
  protein NfsA protein
  protein NfsB protein
  protein PoxB protein
  protein PqiA protein
  protein PqiB protein
  protein PqiC protein
  protein PurA protein
  protein PutA protein
  protein RNA:MicF protein
  protein RimK protein
  protein Rob protein
  protein Slp protein
  protein SodA protein
  protein TolC protein
  complex TolC-MacB-MacA complex
  complex TolC-MdtC-MdtB-MdtA complex
  complex TolC-MdtE-MdtF complex
  protein WaaY protein
  protein WaaZ protein
  protein XseA protein
  complex XseA-XseB complex
  protein XseB protein
  protein YbjC protein
  protein YbjN protein
  protein YgiA protein
  protein YgiB protein
  protein YgiC protein
  protein YhiD protein
  protein YncE protein
  protein Zwf protein
  simple_molecule [protein] α-L-glu-α-L-glu simple_molecule
  simple_molecule [protein] C-terminal L-glutamate simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule acetoin simple_molecule
  gene acnA gene
  RNA acnA_mRNA RNA
  gene acrAB gene
  RNA acrAB_mRNA RNA
  gene acrZ gene
  RNA acrZ_mRNA RNA
  simple_molecule acriflavine simple_molecule
  simple_molecule acriflavine_Ext simple_molecule
  simple_molecule adenylo-succinate simple_molecule
  gene aldA gene
  RNA aldA_mRNA RNA
  simple_molecule aspartate simple_molecule
  simple_molecule caprate simple_molecule
  simple_molecule caprate_Ext simple_molecule
  simple_molecule chenodiol simple_molecule
  simple_molecule chenodiol_Ext simple_molecule
  simple_molecule cis-aconitate simple_molecule
  simple_molecule citrate simple_molecule
  simple_molecule cytidylate simple_molecule
  gene decR gene
  RNA decR_mRNA RNA
  simple_molecule deoxycholate simple_molecule
  simple_molecule deoxycholate_Ext simple_molecule
  simple_molecule drug simple_molecule
  simple_molecule drug_Ext simple_molecule
  simple_molecule enterobactin simple_molecule
  simple_molecule enterobactin_Ext simple_molecule
  simple_molecule ethanal simple_molecule
  gene fpr gene
  RNA fpr_mRNA RNA
  gene fumC gene
  RNA fumC_mRNA RNA
  simple_molecule fumarate simple_molecule
  simple_molecule glucose-6-P simple_molecule
  simple_molecule glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate simple_molecule
  simple_molecule glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate simple_molecule
  simple_molecule glutamate-semialdehyde simple_molecule
  simple_molecule glycoaldehyde simple_molecule
  simple_molecule glycolate simple_molecule
  simple_molecule guanosine-diphosphate simple_molecule
  simple_molecule guanosine-triphosphate simple_molecule
  gene hdeAB-yhiD gene
  RNA hdeAB-yhiD_mRNA RNA
  simple_molecule hexane simple_molecule
  simple_molecule hexane_Ext simple_molecule
  gene inaA gene
  RNA inaA_mRNA RNA
  simple_molecule lactaldehyde simple_molecule
  simple_molecule lactate simple_molecule
  simple_molecule macrolide antibiotic simple_molecule
  simple_molecule macrolide antibiotic_Ext simple_molecule
  simple_molecule malate simple_molecule
  gene marRAB gene
  RNA marRAB_mRNA RNA
  gene micF gene
  RNA micF_mRNA RNA
  gene mlaFEDCB gene
  RNA mlaFEDCB_mRNA RNA
  gene nfo gene
  RNA nfo_mRNA RNA
  gene nfsB gene
  RNA nfsB_mRNA RNA
  simple_molecule novobiocin simple_molecule
  simple_molecule novobiocin_Ext simple_molecule
  simple_molecule oligonucleotide(n) simple_molecule
  simple_molecule oxidized ferredoxin simple_molecule
  simple_molecule oxidized nitroaromatic compound simple_molecule
  simple_molecule oxygen simple_molecule
  simple_molecule perhydrol simple_molecule
  simple_molecule phosphate simple_molecule
  gene poxB gene
  RNA poxB_mRNA RNA
  gene pqiABC gene
  RNA pqiABC_mRNA RNA
  simple_molecule proline simple_molecule
  gene purA gene
  RNA purA_mRNA RNA
  gene putA gene
  RNA putA_mRNA RNA
  simple_molecule pyrroline 5-carboxylate simple_molecule
  simple_molecule pyruvate simple_molecule
  simple_molecule reduced ferredoxin simple_molecule
  simple_molecule reduced nitroaromatic compound simple_molecule
  gene rob gene
  RNA rob_mRNA RNA
  simple_molecule single stranded DNA simple_molecule
  gene slp-dctR gene
  RNA slp-dctR_mRNA RNA
  gene sodA gene
  RNA sodA_mRNA RNA
  simple_molecule superoxide simple_molecule
  simple_molecule tetrahydropteridine simple_molecule
  gene tolC-ygiABC gene
  RNA tolC-ygiABC_mRNA RNA
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinone simple_molecule
  gene waaYZ gene
  RNA waaYZ_mRNA RNA
  gene xseA gene
  RNA xseA_mRNA RNA
  gene ybjC-nfsA-rimK-ybjN gene
  RNA ybjC-nfsA-rimK-ybjN_mRNA RNA
  gene yncE gene
  RNA yncE_mRNA RNA
  gene zwf gene
  RNA zwf_mRNA RNA


Reactions       
Showing 116 reactions
MarA acnA acnA_mRNA
Name: acnA -> acnA_mRNA
Description: Transcription of transcription unit acnA. Reaction activation by MarA.
Type: transcription
Pathway Components: acnA - MarA -> acnA_mRNA
Components:
Function Name Type
activator MarA protein
reactant acnA gene
product acnA_mRNA RNA
MarA acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB. Reaction activation by MarA.
Type: transcription
Pathway Components: acrAB - MarA -> acrAB_mRNA
Components:
Function Name Type
activator MarA protein
reactant acrAB gene
product acrAB_mRNA RNA
MarA acrZ acrZ_mRNA
Name: acrZ -> acrZ_mRNA
Description: Transcription of transcription unit acrZ. Reaction activation by MarA.
Type: transcription
Pathway Components: acrZ - MarA -> acrZ_mRNA
Components:
Function Name Type
activator MarA protein
reactant acrZ gene
product acrZ_mRNA RNA
MarA aldA aldA_mRNA
Name: aldA -> aldA_mRNA
Description: Transcription of transcription unit aldA. Reaction activation by MarA.
Type: transcription
Pathway Components: aldA - MarA -> aldA_mRNA
Components:
Function Name Type
activator MarA protein
reactant aldA gene
product aldA_mRNA RNA
MarA decR decR_mRNA
Name: decR -> decR_mRNA
Description: Transcription of transcription unit decR. Reaction activation by MarA.
Type: transcription
Pathway Components: decR - MarA -> decR_mRNA
Components:
Function Name Type
activator MarA protein
reactant decR gene
product decR_mRNA RNA
MarA fpr fpr_mRNA
Name: fpr -> fpr_mRNA
Description: Transcription of transcription unit fpr. Reaction activation by MarA.
Type: transcription
Pathway Components: fpr - MarA -> fpr_mRNA
Components:
Function Name Type
activator MarA protein
reactant fpr gene
product fpr_mRNA RNA
MarA fumC fumC_mRNA
Name: fumC -> fumC_mRNA
Description: Transcription of transcription unit fumC. Reaction activation by MarA.
Type: transcription
Pathway Components: fumC - MarA -> fumC_mRNA
Components:
Function Name Type
activator MarA protein
reactant fumC gene
product fumC_mRNA RNA
MarA inaA inaA_mRNA
Name: inaA -> inaA_mRNA
Description: Transcription of transcription unit inaA. Reaction activation by MarA.
Type: transcription
Pathway Components: inaA - MarA -> inaA_mRNA
Components:
Function Name Type
activator MarA protein
reactant inaA gene
product inaA_mRNA RNA
MarA marRAB marRAB_mRNA
Name: marRAB -> marRAB_mRNA
Description: Transcription of transcription unit marRAB. Reaction activation by MarA.
Type: transcription
Pathway Components: marRAB - MarA -> marRAB_mRNA
Components:
Function Name Type
activator MarA protein
reactant marRAB gene
product marRAB_mRNA RNA
MarA micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF. Reaction activation by MarA.
Type: transcription
Pathway Components: micF - MarA -> micF_mRNA
Components:
Function Name Type
activator MarA protein
reactant micF gene
product micF_mRNA RNA
MarA mlaFEDCB mlaFEDCB_mRNA
Name: mlaFEDCB -> mlaFEDCB_mRNA
Description: Transcription of transcription unit mlaFEDCB. Reaction activation by MarA.
Type: transcription
Pathway Components: mlaFEDCB - MarA -> mlaFEDCB_mRNA
Components:
Function Name Type
activator MarA protein
reactant mlaFEDCB gene
product mlaFEDCB_mRNA RNA
MarA nfo nfo_mRNA
Name: nfo -> nfo_mRNA
Description: Transcription of transcription unit nfo. Reaction activation by MarA.
Type: transcription
Pathway Components: nfo - MarA -> nfo_mRNA
Components:
Function Name Type
activator MarA protein
reactant nfo gene
product nfo_mRNA RNA
MarA nfsB nfsB_mRNA
Name: nfsB -> nfsB_mRNA
Description: Transcription of transcription unit nfsB. Reaction activation by MarA.
Type: transcription
Pathway Components: nfsB - MarA -> nfsB_mRNA
Components:
Function Name Type
activator MarA protein
reactant nfsB gene
product nfsB_mRNA RNA
MarA poxB poxB_mRNA
Name: poxB -> poxB_mRNA
Description: Transcription of transcription unit poxB. Reaction activation by MarA.
Type: transcription
Pathway Components: poxB - MarA -> poxB_mRNA
Components:
Function Name Type
activator MarA protein
reactant poxB gene
product poxB_mRNA RNA
MarA pqiABC pqiABC_mRNA
Name: pqiABC -> pqiABC_mRNA
Description: Transcription of transcription unit pqiABC. Reaction activation by MarA.
Type: transcription
Pathway Components: pqiABC - MarA -> pqiABC_mRNA
Components:
Function Name Type
activator MarA protein
reactant pqiABC gene
product pqiABC_mRNA RNA
MarA putA putA_mRNA
Name: putA -> putA_mRNA
Description: Transcription of transcription unit putA. Reaction activation by MarA.
Type: transcription
Pathway Components: putA - MarA -> putA_mRNA
Components:
Function Name Type
activator MarA protein
reactant putA gene
product putA_mRNA RNA
MarA sodA sodA_mRNA
Name: sodA -> sodA_mRNA
Description: Transcription of transcription unit sodA. Reaction activation by MarA.
Type: transcription
Pathway Components: sodA - MarA -> sodA_mRNA
Components:
Function Name Type
activator MarA protein
reactant sodA gene
product sodA_mRNA RNA
MarA tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC. Reaction activation by MarA.
Type: transcription
Pathway Components: tolC-ygiABC - MarA -> tolC-ygiABC_mRNA
Components:
Function Name Type
activator MarA protein
reactant tolC-ygiABC gene
product tolC-ygiABC_mRNA RNA
MarA waaYZ waaYZ_mRNA
Name: waaYZ -> waaYZ_mRNA
Description: Transcription of transcription unit waaYZ. Reaction activation by MarA.
Type: transcription
Pathway Components: waaYZ - MarA -> waaYZ_mRNA
Components:
Function Name Type
activator MarA protein
reactant waaYZ gene
product waaYZ_mRNA RNA
MarA xseA xseA_mRNA
Name: xseA -> xseA_mRNA
Description: Transcription of transcription unit xseA. Reaction activation by MarA.
Type: transcription
Pathway Components: xseA - MarA -> xseA_mRNA
Components:
Function Name Type
activator MarA protein
reactant xseA gene
product xseA_mRNA RNA
MarA ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN. Reaction activation by MarA.
Type: transcription
Pathway Components: ybjC-nfsA-rimK-ybjN - MarA -> ybjC-nfsA-rimK-ybjN_mRNA
Components:
Function Name Type
activator MarA protein
reactant ybjC-nfsA-rimK-ybjN gene
product ybjC-nfsA-rimK-ybjN_mRNA RNA
MarA yncE yncE_mRNA
Name: yncE -> yncE_mRNA
Description: Transcription of transcription unit yncE. Reaction activation by MarA.
Type: transcription
Pathway Components: yncE - MarA -> yncE_mRNA
Components:
Function Name Type
activator MarA protein
reactant yncE gene
product yncE_mRNA RNA
MarA zwf zwf_mRNA
Name: zwf -> zwf_mRNA
Description: Transcription of transcription unit zwf. Reaction activation by MarA.
Type: transcription
Pathway Components: zwf - MarA -> zwf_mRNA
Components:
Function Name Type
activator MarA protein
reactant zwf gene
product zwf_mRNA RNA
MarA hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD. Reaction inhibition by MarA.
Type: transcription
Pathway Components: hdeAB-yhiD - MarA -> hdeAB-yhiD_mRNA
Components:
Function Name Type
inhibitor MarA protein
reactant hdeAB-yhiD gene
product hdeAB-yhiD_mRNA RNA
MarA purA purA_mRNA
Name: purA -> purA_mRNA
Description: Transcription of transcription unit purA. Reaction inhibition by MarA.
Type: transcription
Pathway Components: purA - MarA -> purA_mRNA
Components:
Function Name Type
inhibitor MarA protein
reactant purA gene
product purA_mRNA RNA
MarA rob rob_mRNA
Name: rob -> rob_mRNA
Description: Transcription of transcription unit rob. Reaction inhibition by MarA.
Type: transcription
Pathway Components: rob - MarA -> rob_mRNA
Components:
Function Name Type
inhibitor MarA protein
reactant rob gene
product rob_mRNA RNA
MarA slp-dctR slp-dctR_mRNA
Name: slp-dctR -> slp-dctR_mRNA
Description: Transcription of transcription unit slp-dctR. Reaction inhibition by MarA.
Type: transcription
Pathway Components: slp-dctR - MarA -> slp-dctR_mRNA
Components:
Function Name Type
inhibitor MarA protein
reactant slp-dctR gene
product slp-dctR_mRNA RNA
aldA_mRNA AldA
Name: aldA_mRNA -> AldA
Description: Translation of AldA
Type: translation
Pathway Components: aldA_mRNA -> AldA
Components:
Function Name Type
product AldA protein
reactant aldA_mRNA RNA
AldA lactaldehyde lactaldehyde lactate
Name: lactaldehyde -> lactate
Description: Reaction transforming lactaldehyde into lactate
Type: state transition
Pathway Components: lactaldehyde - AldA - lactaldehyde -> lactate
Components:
Function Name Type
catalyzer AldA protein
inhibitor lactaldehyde simple_molecule
reactant lactaldehyde simple_molecule
product lactate simple_molecule
AldA glycoaldehyde glycoaldehyde glycolate
Name: glycoaldehyde -> glycolate
Description: Reaction transforming glycoaldehyde into glycolate
Type: state transition
Pathway Components: glycoaldehyde - AldA - glycoaldehyde -> glycolate
Components:
Function Name Type
catalyzer AldA protein
inhibitor glycoaldehyde simple_molecule
reactant glycoaldehyde simple_molecule
product glycolate simple_molecule
waaYZ_mRNA WaaY
Name: waaYZ_mRNA -> WaaY
Description: Translation of WaaY
Type: translation
Pathway Components: waaYZ_mRNA -> WaaY
Components:
Function Name Type
product WaaY protein
reactant waaYZ_mRNA RNA
WaaY glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Name: glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate -> glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Description: Reaction transforming glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate into glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Type: state transition
Pathway Components: glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate - WaaY -> glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate
Components:
Function Name Type
catalyzer WaaY protein
product glucosyl-(heptosyl)3-Kdo2-lipid A-bisphosphate simple_molecule
reactant glucosyl-(heptosyl)3-Kdo2-lipid A-phosphate simple_molecule
waaYZ_mRNA WaaZ
Name: waaYZ_mRNA -> WaaZ
Description: Translation of WaaZ
Type: translation
Pathway Components: waaYZ_mRNA -> WaaZ
Components:
Function Name Type
product WaaZ protein
reactant waaYZ_mRNA RNA
WaaZ (Kdo)2-lipid IVA + CMP-Kdo KDOIII-lipopolysaccharide + cytidylate
Name: (Kdo)2-lipid IVA + CMP-Kdo -> KDOIII-lipopolysaccharide + cytidylate
Description: Reaction transforming (Kdo)2-lipid IVA, CMP-Kdo into KDOIII-lipopolysaccharide, cytidylate
Type: state transition
Pathway Components: (Kdo)2-lipid IVA + CMP-Kdo - WaaZ -> KDOIII-lipopolysaccharide + cytidylate
Components:
Function Name Type
reactant (Kdo)2-lipid IVA simple_molecule
reactant CMP-Kdo simple_molecule
product KDOIII-lipopolysaccharide simple_molecule
catalyzer WaaZ protein
product cytidylate simple_molecule
yncE_mRNA YncE
Name: yncE_mRNA -> YncE
Description: Translation of YncE
Type: translation
Pathway Components: yncE_mRNA -> YncE
Components:
Function Name Type
product YncE protein
reactant yncE_mRNA RNA
inaA_mRNA InaA
Name: inaA_mRNA -> InaA
Description: Translation of InaA
Type: translation
Pathway Components: inaA_mRNA -> InaA
Components:
Function Name Type
product InaA protein
reactant inaA_mRNA RNA
xseA_mRNA XseA
Name: xseA_mRNA -> XseA
Description: Translation of XseA
Type: translation
Pathway Components: xseA_mRNA -> XseA
Components:
Function Name Type
product XseA protein
reactant xseA_mRNA RNA
XseA + XseB XseA-XseB
Name: XseA + XseB -> XseA-XseB
Description: Reaction transforming XseA, XseB into XseA-XseB
Type: state transition
Pathway Components: XseA + XseB -> XseA-XseB
Components:
Function Name Type
reactant XseA protein
product XseA-XseB complex
reactant XseB protein
XseA-XseB single stranded DNA oligonucleotide(n) + 5'-ribonucleotide
Name: single stranded DNA -> oligonucleotide(n) + 5'-ribonucleotide
Description: Reaction transforming single stranded DNA into oligonucleotide(n), 5'-ribonucleotide
Type: state transition
Pathway Components: single stranded DNA - XseA-XseB -> oligonucleotide(n) + 5'-ribonucleotide
Components:
Function Name Type
product 5'-ribonucleotide simple_molecule
catalyzer XseA-XseB complex
product oligonucleotide(n) simple_molecule
reactant single stranded DNA simple_molecule
fumC_mRNA FumC
Name: fumC_mRNA -> FumC
Description: Translation of FumC
Type: translation
Pathway Components: fumC_mRNA -> FumC
Components:
Function Name Type
product FumC protein
reactant fumC_mRNA RNA
FumC citrate superoxide malate fumarate
Name: malate -> fumarate
Description: Reaction transforming malate into fumarate
Type: state transition
Pathway Components: malate - FumC - citrate - superoxide -> fumarate
Components:
Function Name Type
catalyzer FumC protein
inhibitor citrate simple_molecule
product fumarate simple_molecule
reactant malate simple_molecule
inhibitor superoxide simple_molecule
purA_mRNA PurA
Name: purA_mRNA -> PurA
Description: Translation of PurA
Type: translation
Pathway Components: purA_mRNA -> PurA
Components:
Function Name Type
product PurA protein
reactant purA_mRNA RNA
PurA guanosine-triphosphate + aspartate + 5'-IMP Products
Name: guanosine-triphosphate + aspartate + 5'-IMP -> guanosine-diphosphate + adenylo-succinate + phosphate
Description: Reaction transforming guanosine-triphosphate, aspartate, 5'-IMP into guanosine-diphosphate, adenylo-succinate , phosphate
Type: state transition
Pathway Components: guanosine-triphosphate + aspartate + 5'-IMP - PurA -> guanosine-diphosphate + adenylo-succinate + phosphate
Components:
Function Name Type
reactant 5'-IMP simple_molecule
catalyzer PurA protein
product adenylo-succinate simple_molecule
reactant aspartate simple_molecule
product guanosine-diphosphate simple_molecule
reactant guanosine-triphosphate simple_molecule
product phosphate simple_molecule
acrAB_mRNA AcrA
Name: acrAB_mRNA -> AcrA
Description: Translation of AcrA
Type: translation
Pathway Components: acrAB_mRNA -> AcrA
Components:
Function Name Type
product AcrA protein
reactant acrAB_mRNA RNA
AcrA + TolC + AcrD AcrD-AcrA-TolC
Name: AcrA + TolC + AcrD -> AcrD-AcrA-TolC
Description: Reaction transforming AcrA, TolC, AcrD into AcrD-AcrA-TolC
Type: state transition
Pathway Components: AcrA + TolC + AcrD -> AcrD-AcrA-TolC
Components:
Function Name Type
reactant AcrA protein
reactant AcrD protein
product AcrD-AcrA-TolC complex
reactant TolC protein
AcrA-TolC-AcrB AcrD-AcrA-TolC AcrE-AcrF-TolC EmrA-EmrB-TolC EmrK-EmrY-TolC TolC-MdtC-MdtB-MdtA TolC-MdtE-MdtF drug_Ext drug
Name: drug_Ext -> drug
Description: Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.
Type: transport
Pathway Components: drug_Ext - AcrA-TolC-AcrB - AcrD-AcrA-TolC - AcrE-AcrF-TolC - EmrA-EmrB-TolC - EmrK-EmrY-TolC - TolC-MdtC-MdtB-MdtA - TolC-MdtE-MdtF -> drug
Components: Show/Hide Components Table
AcrB + TolC + AcrA AcrA-TolC-AcrB
Name: AcrB + TolC + AcrA -> AcrA-TolC-AcrB
Description: Reaction transforming AcrB, TolC, AcrA into AcrA-TolC-AcrB
Type: state transition
Pathway Components: AcrB + TolC + AcrA -> AcrA-TolC-AcrB
Components:
Function Name Type
reactant AcrA protein
product AcrA-TolC-AcrB complex
reactant AcrB protein
reactant TolC protein
AcrA-TolC-AcrB acriflavine_Ext acriflavine
Name: acriflavine_Ext -> acriflavine
Description: Transport of acriflavine_Ext through a bacterial membrane, leading to the presence of acriflavine inside the cell.
Type: transport
Pathway Components: acriflavine_Ext - AcrA-TolC-AcrB -> acriflavine
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product acriflavine simple_molecule
reactant acriflavine_Ext simple_molecule
AcrA-TolC-AcrB chenodiol_Ext chenodiol
Name: chenodiol_Ext -> chenodiol
Description: Transport of chenodiol_Ext through a bacterial membrane, leading to the presence of chenodiol inside the cell.
Type: transport
Pathway Components: chenodiol_Ext - AcrA-TolC-AcrB -> chenodiol
Components:
Function Name Type
catalyzer AcrA-TolC-AcrB complex
product chenodiol simple_molecule
reactant chenodiol_Ext simple_molecule
AcrA-TolC-AcrB caprate_Ext