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HyfR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
HyfH HyfC HyfE HyfF HyfI HyfF hydrogen HyfA HyfG HyfA HyfB HyfJ hyfABCDEFGHIJR-focB electron HyfB HyfG HyfD HyfI hyfABCDEFGHIJR-focB_mRNA HyfD HyfH HyfR HyfC HyfE FocB


Gensor Unit       
Name: HyfR
Classification:
Groups: Inorganic ion transport and metabolism
Transcription
Energy production and conversion
Gene Ontology Terms (GO): biological_process GO:0042773 - ATP synthesis coupled electron transport
GO:0006352 - DNA-templated transcription, initiation
GO:0006974 - cellular response to DNA damage stimulus
GO:0015724 - formate transport
GO:0000160 - phosphorelay signal transduction system
GO:2000142 - regulation of DNA-templated transcription, initiation
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cellular_component GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular anatomical structure
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
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molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0051287 - NAD binding
GO:0008137 - NADH dehydrogenase (ubiquinone) activity
GO:0015499 - formate transmembrane transporter activity
GO:0051536 - iron-sulfur cluster binding
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Components:
  Function Name Type
  protein FocB protein
  protein HyfA protein
  protein HyfB protein
  protein HyfC protein
  protein HyfD protein
  protein HyfE protein
  protein HyfF protein
  protein HyfG protein
  complex HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH complex
  protein HyfH protein
  protein HyfI protein
  protein HyfJ protein
  protein HyfR protein
  simple_molecule electron simple_molecule
  simple_molecule hydrogen simple_molecule
  gene hyfABCDEFGHIJR-focB gene
  RNA hyfABCDEFGHIJR-focB_mRNA RNA


Reactions       
Showing 15 reactions
HyfR hyfABCDEFGHIJR-focB hyfABCDEFGHIJR-focB_mRNA
Name: hyfABCDEFGHIJR-focB -> hyfABCDEFGHIJR-focB_mRNA
Description: Transcription of transcription unit hyfABCDEFGHIJR-focB. Reaction activation by HyfR.
Type: transcription
Pathway Components: hyfABCDEFGHIJR-focB - HyfR -> hyfABCDEFGHIJR-focB_mRNA
Components:
Function Name Type
activator HyfR protein
reactant hyfABCDEFGHIJR-focB gene
product hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfA
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfA
Description: Translation of HyfA
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfA
Components:
Function Name Type
product HyfA protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
Protein Monomers HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Name: HyfC + HyfI + HyfF + HyfA + HyfG + HyfB + HyfD + HyfE + HyfH -> HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Description: Reaction transforming HyfC, HyfI, HyfF, HyfA, HyfG, HyfB, HyfD, HyfE, HyfH into HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Type: state transition
Pathway Components: HyfC + HyfI + HyfF + HyfA + HyfG + HyfB + HyfD + HyfE + HyfH -> HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Components: Show/Hide Components Table
HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH electron hydrogen
Name: electron -> hydrogen
Description: Reaction transforming electron into hydrogen
Type: state transition
Pathway Components: electron - HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH -> hydrogen
Components:
Function Name Type
catalyzer HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH complex
reactant electron simple_molecule
product hydrogen simple_molecule
hyfABCDEFGHIJR-focB_mRNA HyfB
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfB
Description: Translation of HyfB
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfB
Components:
Function Name Type
product HyfB protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfC
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfC
Description: Translation of HyfC
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfC
Components:
Function Name Type
product HyfC protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfD
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfD
Description: Translation of HyfD
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfD
Components:
Function Name Type
product HyfD protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfE
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfE
Description: Translation of HyfE
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfE
Components:
Function Name Type
product HyfE protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfF
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfF
Description: Translation of HyfF
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfF
Components:
Function Name Type
product HyfF protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfG
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfG
Description: Translation of HyfG
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfG
Components:
Function Name Type
product HyfG protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfH
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfH
Description: Translation of HyfH
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfH
Components:
Function Name Type
product HyfH protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfI
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfI
Description: Translation of HyfI
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfI
Components:
Function Name Type
product HyfI protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfJ
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfJ
Description: Translation of HyfJ
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfJ
Components:
Function Name Type
product HyfJ protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfR
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfR
Description: Translation of HyfR
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfR
Components:
Function Name Type
product HyfR protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA FocB
Name: hyfABCDEFGHIJR-focB_mRNA -> FocB
Description: Translation of FocB
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> FocB
Components:
Function Name Type
product FocB protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA



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