RegulonDB

Name:

cadBA -> cadBA_mRNA

Description:

Transcription of transcription unit cadBA. Reaction activation by GadX.

Type:

transcription

Pathway Components:

cadBA - GadX -> cadBA_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	cadBA	gene
product	cadBA_mRNA	RNA

Name:

gadAX -> gadAX_mRNA

Description:

Transcription of transcription unit gadAX. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadAX - GadX -> gadAX_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadAX	gene
product	gadAX_mRNA	RNA

Name:

gadBC -> gadBC_mRNA

Description:

Transcription of transcription unit gadBC. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadBC - GadX -> gadBC_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadBC	gene
product	gadBC_mRNA	RNA

Name:

gadEF -> gadEF_mRNA

Description:

Transcription of transcription unit gadEF. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadEF - GadX -> gadEF_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadEF	gene
product	gadEF_mRNA	RNA

Name:

gadEF-mdtEF -> gadEF-mdtEF_mRNA

Description:

Transcription of transcription unit gadEF-mdtEF. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadEF-mdtEF - GadX -> gadEF-mdtEF_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadEF-mdtEF	gene
product	gadEF-mdtEF_mRNA	RNA

Name:

gadX -> gadX_mRNA

Description:

Transcription of transcription unit gadX. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadX - GadX -> gadX_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadX	gene
product	gadX_mRNA	RNA

Name:

gadXW -> gadXW_mRNA

Description:

Transcription of transcription unit gadXW. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadXW - GadX -> gadXW_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadXW	gene
product	gadXW_mRNA	RNA

Name:

gadY -> gadY_mRNA

Description:

Transcription of transcription unit gadY. Reaction activation by GadX.

Type:

transcription

Pathway Components:

gadY - GadX -> gadY_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	gadY	gene
product	gadY_mRNA	RNA

Name:

glnK-amtB -> glnK-amtB_mRNA

Description:

Transcription of transcription unit glnK-amtB. Reaction activation by GadX.

Type:

transcription

Pathway Components:

glnK-amtB - GadX -> glnK-amtB_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	glnK-amtB	gene
product	glnK-amtB_mRNA	RNA

Name:

glsA-ybaT -> glsA-ybaT_mRNA

Description:

Transcription of transcription unit glsA-ybaT. Reaction activation by GadX.

Type:

transcription

Pathway Components:

glsA-ybaT - GadX -> glsA-ybaT_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	glsA-ybaT	gene
product	glsA-ybaT_mRNA	RNA

Name:

hdeD -> hdeD_mRNA

Description:

Transcription of transcription unit hdeD. Reaction activation by GadX.

Type:

transcription

Pathway Components:

hdeD - GadX -> hdeD_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	hdeD	gene
product	hdeD_mRNA	RNA

Name:

hns -> hns_mRNA

Description:

Transcription of transcription unit hns. Reaction activation by GadX.

Type:

transcription

Pathway Components:

hns - GadX -> hns_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	hns	gene
product	hns_mRNA	RNA

Name:

lon -> lon_mRNA

Description:

Transcription of transcription unit lon. Reaction activation by GadX.

Type:

transcription

Pathway Components:

lon - GadX -> lon_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	lon	gene
product	lon_mRNA	RNA

Name:

rpoS -> rpoS_mRNA

Description:

Transcription of transcription unit rpoS. Reaction activation by GadX.

Type:

transcription

Pathway Components:

rpoS - GadX -> rpoS_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	rpoS	gene
product	rpoS_mRNA	RNA

Name:

slp-dctR -> slp-dctR_mRNA

Description:

Transcription of transcription unit slp-dctR. Reaction activation by GadX.

Type:

transcription

Pathway Components:

slp-dctR - GadX -> slp-dctR_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	slp-dctR	gene
product	slp-dctR_mRNA	RNA

Name:

uspE -> uspE_mRNA

Description:

Transcription of transcription unit uspE. Reaction activation by GadX.

Type:

transcription

Pathway Components:

uspE - GadX -> uspE_mRNA

Components:

Function	Name	Type
activator	GadX	protein
reactant	uspE	gene
product	uspE_mRNA	RNA

Name:

hdeAB-yhiD -> hdeAB-yhiD_mRNA

Description:

Transcription of transcription unit hdeAB-yhiD. Reaction activation by GadX. Reaction inhibition by GadX.

Type:

transcription

Pathway Components:

hdeAB-yhiD - GadX - GadX -> hdeAB-yhiD_mRNA

Components:

Function	Name	Type
activator	GadX	protein
inhibitor	GadX	protein
reactant	hdeAB-yhiD	gene
product	hdeAB-yhiD_mRNA	RNA

Name:

btuB-murI -> btuB-murI_mRNA

Description:

Transcription of transcription unit btuB-murI. Reaction inhibition by GadX.

Type:

transcription

Pathway Components:

btuB-murI - GadX -> btuB-murI_mRNA

Components:

Function	Name	Type
inhibitor	GadX	protein
reactant	btuB-murI	gene
product	btuB-murI_mRNA	RNA

Name:

gadW -> gadW_mRNA

Description:

Transcription of transcription unit gadW. Reaction inhibition by GadX.

Type:

transcription

Pathway Components:

gadW - GadX -> gadW_mRNA

Components:

Function	Name	Type
inhibitor	GadX	protein
reactant	gadW	gene
product	gadW_mRNA	RNA

Name:

ydeNM -> ydeNM_mRNA

Description:

Transcription of transcription unit ydeNM. Reaction inhibition by GadX.

Type:

transcription

Pathway Components:

ydeNM - GadX -> ydeNM_mRNA

Components:

Function	Name	Type
inhibitor	GadX	protein
reactant	ydeNM	gene
product	ydeNM_mRNA	RNA

Name:

ynfB-speG -> ynfB-speG_mRNA

Description:

Transcription of transcription unit ynfB-speG. Reaction inhibition by GadX.

Type:

transcription

Pathway Components:

ynfB-speG - GadX -> ynfB-speG_mRNA

Components:

Function	Name	Type
inhibitor	GadX	protein
reactant	ynfB-speG	gene
product	ynfB-speG_mRNA	RNA

Name:

cadBA_mRNA -> CadB

Description:

Translation of CadB

Type:

translation

Pathway Components:

cadBA_mRNA -> CadB

Components:

Function	Name	Type
product	CadB	protein
reactant	cadBA_mRNA	RNA

Name:

BioDex 1-_Ext + lysine_Ext -> BioDex 1- + lysine

Description:

Transport of BioDex 1-_Ext, lysine_Ext through a bacterial membrane, leading to the presence of BioDex 1-, lysine inside the cell.

Type:

transport

Pathway Components:

BioDex 1-_Ext + lysine_Ext - CadB -> BioDex 1- + lysine

Components:

Function	Name	Type
product	BioDex 1-	simple_molecule
reactant	BioDex 1-_Ext	simple_molecule
catalyzer	CadB	protein
product	lysine	simple_molecule
reactant	lysine_Ext	simple_molecule

Name:

BioDex 1-_Ext -> BioDex 1-

Description:

Transport of BioDex 1-_Ext through a bacterial membrane, leading to the presence of BioDex 1- inside the cell.

Type:

transport

Pathway Components:

BioDex 1-_Ext - CadB -> BioDex 1-

Components:

Function	Name	Type
product	BioDex 1-	simple_molecule
reactant	BioDex 1-_Ext	simple_molecule
catalyzer	CadB	protein

Name:

cadBA_mRNA -> CadA

Description:

Translation of CadA

Type:

translation

Pathway Components:

cadBA_mRNA -> CadA

Components:

Function	Name	Type
product	CadA	protein
reactant	cadBA_mRNA	RNA

Name:

lysine -> BioDex 1- + CO2

Description:

Reaction transforming lysine into BioDex 1-, CO2

Type:

state transition

Pathway Components:

lysine - CadA - LdcI - spermidine -> BioDex 1- + CO2

Components:

Function	Name	Type
product	BioDex 1-	simple_molecule
product	CO2	simple_molecule
catalyzer	CadA	protein
catalyzer	LdcI	protein
reactant	lysine	simple_molecule
inhibitor	spermidine	simple_molecule

Name:

cadBA_mRNA -> LdcI

Description:

Translation of LdcI

Type:

translation

Pathway Components:

cadBA_mRNA -> LdcI

Components:

Function	Name	Type
product	LdcI	protein
reactant	cadBA_mRNA	RNA

Name:

hns_mRNA -> Hns

Description:

Translation of Hns

Type:

translation

Pathway Components:

hns_mRNA -> Hns

Components:

Function	Name	Type
product	Hns	protein
reactant	hns_mRNA	RNA

Name:

glnK-amtB_mRNA -> GlnK

Description:

Translation of GlnK

Type:

translation

Pathway Components:

glnK-amtB_mRNA -> GlnK

Components:

Function	Name	Type
product	GlnK	simple_molecule
reactant	glnK-amtB_mRNA	RNA

Name:

glnK-amtB_mRNA -> AmtB

Description:

Translation of AmtB

Type:

translation

Pathway Components:

glnK-amtB_mRNA -> AmtB

Components:

Function	Name	Type
product	AmtB	protein
reactant	glnK-amtB_mRNA	RNA

Name:

ammonium_Ext -> ammonium

Description:

Transport of ammonium_Ext through a bacterial membrane, leading to the presence of ammonium inside the cell.

Type:

transport

Pathway Components:

ammonium_Ext - AmtB -> ammonium

Components:

Function	Name	Type
catalyzer	AmtB	protein
product	ammonium	simple_molecule
reactant	ammonium_Ext	simple_molecule

Name:

hdeD_mRNA -> HdeD

Description:

Translation of HdeD

Type:

translation

Pathway Components:

hdeD_mRNA -> HdeD

Components:

Function	Name	Type
product	HdeD	protein
reactant	hdeD_mRNA	RNA

Name:

glsA-ybaT_mRNA -> GlsA

Description:

Translation of GlsA

Type:

translation

Pathway Components:

glsA-ybaT_mRNA -> GlsA

Components:

Function	Name	Type
product	GlsA	protein
reactant	glsA-ybaT_mRNA	RNA

Name:

glutamine -> L-glutamate + ammonium

Description:

Reaction transforming glutamine into L-glutamate, ammonium

Type:

state transition

Pathway Components:

glutamine - AsnB - GlsA -> L-glutamate + ammonium

Components:

Function	Name	Type
catalyzer	AsnB	protein
catalyzer	GlsA	protein
product	L-glutamate	simple_molecule
product	ammonium	simple_molecule
reactant	glutamine	simple_molecule

Name:

glsA-ybaT_mRNA -> YbaT

Description:

Translation of YbaT

Type:

translation

Pathway Components:

glsA-ybaT_mRNA -> YbaT

Components:

Function	Name	Type
product	YbaT	protein
reactant	glsA-ybaT_mRNA	RNA

Name:

rpoS_mRNA -> RpoS

Description:

Translation of RpoS

Type:

translation

Pathway Components:

rpoS_mRNA -> RpoS

Components:

Function	Name	Type
product	RpoS	protein
reactant	rpoS_mRNA	RNA

Name:

RpoA + RpoB + RpoS + RpoC -> RpoB-RpoC-RpoA-RpoS

Description:

Reaction transforming RpoA, RpoB, RpoS, RpoC into RpoB-RpoC-RpoA-RpoS

Type:

state transition

Pathway Components:

RpoA + RpoB + RpoS + RpoC -> RpoB-RpoC-RpoA-RpoS

Components:

Function	Name	Type
reactant	RpoA	protein
reactant	RpoB	protein
product	RpoB-RpoC-RpoA-RpoS	complex
reactant	RpoC	protein
reactant	RpoS	protein

Name:

uspE_mRNA -> UspE

Description:

Translation of UspE

Type:

translation

Pathway Components:

uspE_mRNA -> UspE

Components:

Function	Name	Type
product	UspE	protein
reactant	uspE_mRNA	RNA

Name:

gadAX_mRNA -> GadA

Description:

Translation of GadA

Type:

translation

Pathway Components:

gadAX_mRNA -> GadA

Components:

Function	Name	Type
product	GadA	protein
reactant	gadAX_mRNA	RNA

Name:

L-glutamate -> GABA + CO2

Description:

Reaction transforming L-glutamate into GABA, CO2

Type:

state transition

Pathway Components:

L-glutamate - GadA - GadB -> GABA + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
product	GABA	simple_molecule
catalyzer	GadA	protein
catalyzer	GadB	protein
reactant	L-glutamate	simple_molecule

Name:

gadAX_mRNA -> GadX

Description:

Translation of GadX

Type:

translation

Pathway Components:

gadAX_mRNA -> GadX

Components:

Function	Name	Type
product	GadX	protein
reactant	gadAX_mRNA	RNA

Name:

gadEF_mRNA -> GadE

Description:

Translation of GadE

Type:

translation

Pathway Components:

gadEF_mRNA -> GadE

Components:

Function	Name	Type
product	GadE	protein
reactant	gadEF_mRNA	RNA

Name:

GadE + RcsB -> RcsB-GadE

Description:

Reaction transforming GadE, RcsB into RcsB-GadE

Type:

state transition

Pathway Components:

GadE + RcsB -> RcsB-GadE

Components:

Function	Name	Type
reactant	GadE	protein
reactant	RcsB	protein
product	RcsB-GadE	complex

Name:

gadEF_mRNA -> RNA:GadF

Description:

Translation of RNA:GadF

Type:

translation

Pathway Components:

gadEF_mRNA -> RNA:GadF

Components:

Function	Name	Type
product	RNA:GadF	protein
reactant	gadEF_mRNA	RNA

Name:

ydeNM_mRNA -> YdeN

Description:

Translation of YdeN

Type:

translation

Pathway Components:

ydeNM_mRNA -> YdeN

Components:

Function	Name	Type
product	YdeN	protein
reactant	ydeNM_mRNA	RNA

Name:

ydeNM_mRNA -> YdeM

Description:

Translation of YdeM

Type:

translation

Pathway Components:

ydeNM_mRNA -> YdeM

Components:

Function	Name	Type
product	YdeM	protein
reactant	ydeNM_mRNA	RNA

Name:

gadEF-mdtEF_mRNA -> GadE

Description:

Translation of GadE

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> GadE

Components:

Function	Name	Type
product	GadE	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

gadEF-mdtEF_mRNA -> RNA:GadF

Description:

Translation of RNA:GadF

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> RNA:GadF

Components:

Function	Name	Type
product	RNA:GadF	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

gadEF-mdtEF_mRNA -> MdtE

Description:

Translation of MdtE

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> MdtE

Components:

Function	Name	Type
product	MdtE	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

TolC + MdtF + MdtE -> TolC-MdtE-MdtF

Description:

Reaction transforming TolC, MdtF, MdtE into TolC-MdtE-MdtF

Type:

state transition

Pathway Components:

TolC + MdtF + MdtE -> TolC-MdtE-MdtF

Components:

Function	Name	Type
reactant	MdtE	protein
reactant	MdtF	protein
reactant	TolC	protein
product	TolC-MdtE-MdtF	complex

Name:

drug_Ext -> drug

Description:

Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.

Type:

transport

Pathway Components:

drug_Ext - TolC-MdtE-MdtF -> drug

Components:

Function	Name	Type
catalyzer	TolC-MdtE-MdtF	complex
product	drug	simple_molecule
reactant	drug_Ext	simple_molecule

Name:

gadEF-mdtEF_mRNA -> MdtF

Description:

Translation of MdtF

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> MdtF

Components:

Function	Name	Type
product	MdtF	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

lon_mRNA -> Lon

Description:

Translation of Lon

Type:

translation

Pathway Components:

lon_mRNA -> Lon

Components:

Function	Name	Type
product	Lon	protein
reactant	lon_mRNA	RNA

Name:

protein -> peptide

Description:

Reaction transforming protein into peptide

Type:

state transition

Pathway Components:

protein - Lon -> peptide

Components:

Function	Name	Type
catalyzer	Lon	protein
product	peptide	simple_molecule
reactant	protein	simple_molecule

Name:

ynfB-speG_mRNA -> YnfB

Description:

Translation of YnfB

Type:

translation

Pathway Components:

ynfB-speG_mRNA -> YnfB

Components:

Function	Name	Type
product	YnfB	protein
reactant	ynfB-speG_mRNA	RNA

Name:

ynfB-speG_mRNA -> SpeG

Description:

Translation of SpeG

Type:

translation

Pathway Components:

ynfB-speG_mRNA -> SpeG

Components:

Function	Name	Type
product	SpeG	protein
reactant	ynfB-speG_mRNA	RNA

Name:

α,ω-diamine + acetyl-CoA -> N-acetyl-diamine + coenzyme A

Description:

Reaction transforming α,ω-diamine, acetyl-CoA into N-acetyl-diamine, coenzyme A

Type:

state transition

Pathway Components:

α,ω-diamine + acetyl-CoA - SpeG -> N-acetyl-diamine + coenzyme A

Components:

Function	Name	Type
reactant	α,ω-diamine	simple_molecule
product	N-acetyl-diamine	simple_molecule
catalyzer	SpeG	protein
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule

Name:

spermidine + acetyl-CoA -> N8-acetylspermidine + coenzyme A

Description:

Reaction transforming spermidine, acetyl-CoA into N8-acetylspermidine, coenzyme A

Type:

state transition

Pathway Components:

spermidine + acetyl-CoA - SpeG -> N8-acetylspermidine + coenzyme A

Components:

Function	Name	Type
product	N8-acetylspermidine	simple_molecule
catalyzer	SpeG	protein
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule
reactant	spermidine	simple_molecule

Name:

acetyl-CoA + spermidine -> N-acetylspermidine + coenzyme A

Description:

Reaction transforming acetyl-CoA, spermidine into N-acetylspermidine, coenzyme A

Type:

state transition

Pathway Components:

acetyl-CoA + spermidine - SpeG -> N-acetylspermidine + coenzyme A

Components:

Function	Name	Type
product	N-acetylspermidine	simple_molecule
catalyzer	SpeG	protein
reactant	acetyl-CoA	simple_molecule
product	coenzyme A	simple_molecule
reactant	spermidine	simple_molecule

Name:

hdeAB-yhiD_mRNA -> HdeA

Description:

Translation of HdeA

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> HdeA

Components:

Function	Name	Type
product	HdeA	protein

Gensor Unit Map