RegulonDB RegulonDB

GadX Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
slp-dctR N-acetylspermidine BtuB CadA DctR lon gadEF N8-acetylspermidine RpoC uspE_mRNA UspE protein hns HdeA cobinamide asnB L-glutamate aspartate This Gensor Unit is not yet available RNA:GadF gadAX_mRNA lysine_Ext GadE glsA-ybaT hdeAB-yhiD YdeN gadEF_mRNA cobinamide_Ext RpoC drug rpoS GABA This Gensor Unit is not yet available hdeD_mRNA TonB glnK-amtB_mRNA hdeAB-yhiD_mRNA acetyl-CoA This Gensor Unit is not yet available GABA_Ext lysine gadY_mRNA MdtE hns_mRNA cadBA ynfB-speG ExbB MdtF ynfB-speG_mRNA TolC B12s ammonium alpha,omega-diamine gadBC_mRNA MurI LdcI RpoA gadY RpoB rpoS_mRNA N-acetyl-diamine HdeB TonB Hns YnfB This Gensor Unit is not yet available coenzyme A TolC HdeD B12s_Ext RpoB Slp glu GadA RcsB AsnB gadEF-mdtEF GlnK RNA:IS183 hdeD CO2 lon_mRNA gadAX diphosphate asnB_mRNA Lon uspE ExbD glutamine GadW peptide YbaT glsA-ybaT_mRNA asparagine SpeG gadBC YhiD MdtF slp-dctR_mRNA RpoS YdeM ammonium_Ext gadEF-mdtEF_mRNA MdtE BioDex 1-_Ext drug_Ext AmtB btuB-murI RpoA ExbD BioDex 1- BtuB cadBA_mRNA This Gensor Unit is not yet available glnK-amtB This Gensor Unit is not yet available GlsA GadC L-glutamate_Ext CadB ydeNM_mRNA ydeNM GadE GadB btuB-murI_mRNA spermidine GadX ExbB RcsB RpoS CO2 L-glutamate GadX


Gensor Unit       
Name: GadX
Classification:
Groups: Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Signal transduction mechanisms
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0006352 - DNA-templated transcription, initiation
GO:1902475 - L-alpha-amino acid transmembrane transport
GO:0070981 - L-asparagine biosynthetic process
GO:1903401 - L-lysine transmembrane transport
GO:0003333 - amino acid transmembrane transport
GO:0006865 - amino acid transport
Read more >
cellular_component GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular anatomical structure
GO:0031226 - intrinsic component of plasma membrane
Read more >
molecular_function GO:0005524 - ATP binding
GO:0004176 - ATP-dependent peptidase activity
GO:0016887 - ATPase activity
GO:0015420 - ATPase-coupled vitamin B12 transmembrane transporter activity
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0001217 - DNA-binding transcription repressor activity
Read more >
Components:
  Function Name Type
  simple_molecule α,ω-diamine simple_molecule
  protein AmtB protein
  protein AsnB protein
  simple_molecule B12s simple_molecule
  simple_molecule B12s_Ext simple_molecule
  simple_molecule BioDex 1- simple_molecule
  simple_molecule BioDex 1-_Ext simple_molecule
  protein BtuB protein
  complex BtuB-ExbD-ExbB-TonB complex
  simple_molecule CO2 simple_molecule
  protein CadA protein
  protein CadB protein
  protein DctR protein
  protein ExbB protein
  protein ExbD protein
  simple_molecule GABA simple_molecule
  simple_molecule GABA_Ext simple_molecule
  protein GadA protein
  protein GadB protein
  protein GadC protein
  protein GadE protein
  protein GadW protein
  protein GadX protein
  protein GlnK protein
  protein GlsA protein
  protein HdeA protein
  protein HdeB protein
  protein HdeD protein
  protein Hns protein
  simple_molecule L-glutamate simple_molecule
  simple_molecule L-glutamate_Ext simple_molecule
  protein LdcI protein
  protein Lon protein
  protein MdtE protein
  protein MdtF protein
  protein MurI protein
  simple_molecule N-acetyl-diamine simple_molecule
  simple_molecule N-acetylspermidine simple_molecule
  simple_molecule N8-acetylspermidine simple_molecule
  protein RNA:GadF protein
  protein RNA:IS183 protein
  protein RcsB protein
  complex RcsB-GadE complex
  protein RpoA protein
  protein RpoB protein
  complex RpoB-RpoC-RpoA-RpoS complex
  protein RpoC protein
  protein RpoS protein
  protein Slp protein
  protein SpeG protein
  protein TolC protein
  complex TolC-MdtE-MdtF complex
  protein TonB protein
  protein UspE protein
  protein YbaT protein
  protein YdeM protein
  protein YdeN protein
  protein YhiD protein
  protein YnfB protein
  simple_molecule acetyl-CoA simple_molecule
  simple_molecule ammonium simple_molecule
  simple_molecule ammonium_Ext simple_molecule
  gene asnB gene
  RNA asnB_mRNA RNA
  simple_molecule asparagine simple_molecule
  simple_molecule aspartate simple_molecule
  gene btuB-murI gene
  RNA btuB-murI_mRNA RNA
  gene cadBA gene
  RNA cadBA_mRNA RNA
  simple_molecule cobinamide simple_molecule
  simple_molecule cobinamide_Ext simple_molecule
  simple_molecule coenzyme A simple_molecule
  simple_molecule diphosphate simple_molecule
  simple_molecule drug simple_molecule
  simple_molecule drug_Ext simple_molecule
  gene gadAX gene
  RNA gadAX_mRNA RNA
  gene gadBC gene
  RNA gadBC_mRNA RNA
  gene gadEF gene
  gene gadEF-mdtEF gene
  RNA gadEF-mdtEF_mRNA RNA
  RNA gadEF_mRNA RNA
  gene gadW gene
  RNA gadW_mRNA RNA
  gene gadX gene
  gene gadXW gene
  RNA gadXW_mRNA RNA
  RNA gadX_mRNA RNA
  gene gadY gene
  RNA gadY_mRNA RNA
  gene glnK-amtB gene
  RNA glnK-amtB_mRNA RNA
  gene glsA-ybaT gene
  RNA glsA-ybaT_mRNA RNA
  simple_molecule glu simple_molecule
  simple_molecule glutamine simple_molecule
  gene hdeAB-yhiD gene
  RNA hdeAB-yhiD_mRNA RNA
  gene hdeD gene
  RNA hdeD_mRNA RNA
  gene hns gene
  RNA hns_mRNA RNA
  gene lon gene
  RNA lon_mRNA RNA
  simple_molecule lysine simple_molecule
  simple_molecule lysine_Ext simple_molecule
  simple_molecule peptide simple_molecule
  simple_molecule protein simple_molecule
  gene rpoS gene
  RNA rpoS_mRNA RNA
  gene slp-dctR gene
  RNA slp-dctR_mRNA RNA
  simple_molecule spermidine simple_molecule
  gene uspE gene
  RNA uspE_mRNA RNA
  gene ydeNM gene
  RNA ydeNM_mRNA RNA
  gene ynfB-speG gene
  RNA ynfB-speG_mRNA RNA


Reactions       
Showing 82 reactions
GadX asnB asnB_mRNA
Name: asnB -> asnB_mRNA
Description: Transcription of transcription unit asnB. Reaction activation by GadX.
Type: transcription
Pathway Components: asnB - GadX -> asnB_mRNA
Components:
Function Name Type
activator GadX protein
reactant asnB gene
product asnB_mRNA RNA
GadX cadBA cadBA_mRNA
Name: cadBA -> cadBA_mRNA
Description: Transcription of transcription unit cadBA. Reaction activation by GadX.
Type: transcription
Pathway Components: cadBA - GadX -> cadBA_mRNA
Components:
Function Name Type
activator GadX protein
reactant cadBA gene
product cadBA_mRNA RNA
GadX gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX. Reaction activation by GadX.
Type: transcription
Pathway Components: gadAX - GadX -> gadAX_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadAX gene
product gadAX_mRNA RNA
GadX gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC. Reaction activation by GadX.
Type: transcription
Pathway Components: gadBC - GadX -> gadBC_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadBC gene
product gadBC_mRNA RNA
GadX gadEF gadEF_mRNA
Name: gadEF -> gadEF_mRNA
Description: Transcription of transcription unit gadEF. Reaction activation by GadX.
Type: transcription
Pathway Components: gadEF - GadX -> gadEF_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadEF gene
product gadEF_mRNA RNA
GadX gadEF-mdtEF gadEF-mdtEF_mRNA
Name: gadEF-mdtEF -> gadEF-mdtEF_mRNA
Description: Transcription of transcription unit gadEF-mdtEF. Reaction activation by GadX.
Type: transcription
Pathway Components: gadEF-mdtEF - GadX -> gadEF-mdtEF_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadEF-mdtEF gene
product gadEF-mdtEF_mRNA RNA
GadX gadX gadX_mRNA
Name: gadX -> gadX_mRNA
Description: Transcription of transcription unit gadX. Reaction activation by GadX.
Type: transcription
Pathway Components: gadX - GadX -> gadX_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadX gene
product gadX_mRNA RNA
GadX gadXW gadXW_mRNA
Name: gadXW -> gadXW_mRNA
Description: Transcription of transcription unit gadXW. Reaction activation by GadX.
Type: transcription
Pathway Components: gadXW - GadX -> gadXW_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadXW gene
product gadXW_mRNA RNA
GadX gadY gadY_mRNA
Name: gadY -> gadY_mRNA
Description: Transcription of transcription unit gadY. Reaction activation by GadX.
Type: transcription
Pathway Components: gadY - GadX -> gadY_mRNA
Components:
Function Name Type
activator GadX protein
reactant gadY gene
product gadY_mRNA RNA
GadX glnK-amtB glnK-amtB_mRNA
Name: glnK-amtB -> glnK-amtB_mRNA
Description: Transcription of transcription unit glnK-amtB. Reaction activation by GadX.
Type: transcription
Pathway Components: glnK-amtB - GadX -> glnK-amtB_mRNA
Components:
Function Name Type
activator GadX protein
reactant glnK-amtB gene
product glnK-amtB_mRNA RNA
GadX glsA-ybaT glsA-ybaT_mRNA
Name: glsA-ybaT -> glsA-ybaT_mRNA
Description: Transcription of transcription unit glsA-ybaT. Reaction activation by GadX.
Type: transcription
Pathway Components: glsA-ybaT - GadX -> glsA-ybaT_mRNA
Components:
Function Name Type
activator GadX protein
reactant glsA-ybaT gene
product glsA-ybaT_mRNA RNA
GadX hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD. Reaction activation by GadX.
Type: transcription
Pathway Components: hdeD - GadX -> hdeD_mRNA
Components:
Function Name Type
activator GadX protein
reactant hdeD gene
product hdeD_mRNA RNA
GadX hns hns_mRNA
Name: hns -> hns_mRNA
Description: Transcription of transcription unit hns. Reaction activation by GadX.
Type: transcription
Pathway Components: hns - GadX -> hns_mRNA
Components:
Function Name Type
activator GadX protein
reactant hns gene
product hns_mRNA RNA
GadX lon lon_mRNA
Name: lon -> lon_mRNA
Description: Transcription of transcription unit lon. Reaction activation by GadX.
Type: transcription
Pathway Components: lon - GadX -> lon_mRNA
Components:
Function Name Type
activator GadX protein
reactant lon gene
product lon_mRNA RNA
GadX rpoS rpoS_mRNA
Name: rpoS -> rpoS_mRNA
Description: Transcription of transcription unit rpoS. Reaction activation by GadX.
Type: transcription
Pathway Components: rpoS - GadX -> rpoS_mRNA
Components:
Function Name Type
activator GadX protein
reactant rpoS gene
product rpoS_mRNA RNA
GadX slp-dctR slp-dctR_mRNA
Name: slp-dctR -> slp-dctR_mRNA
Description: Transcription of transcription unit slp-dctR. Reaction activation by GadX.
Type: transcription
Pathway Components: slp-dctR - GadX -> slp-dctR_mRNA
Components:
Function Name Type
activator GadX protein
reactant slp-dctR gene
product slp-dctR_mRNA RNA
GadX uspE uspE_mRNA
Name: uspE -> uspE_mRNA
Description: Transcription of transcription unit uspE. Reaction activation by GadX.
Type: transcription
Pathway Components: uspE - GadX -> uspE_mRNA
Components:
Function Name Type
activator GadX protein
reactant uspE gene
product uspE_mRNA RNA
GadX GadX hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD. Reaction activation by GadX. Reaction inhibition by GadX.
Type: transcription
Pathway Components: hdeAB-yhiD - GadX - GadX -> hdeAB-yhiD_mRNA
Components:
Function Name Type
activator GadX protein
inhibitor GadX protein
reactant hdeAB-yhiD gene
product hdeAB-yhiD_mRNA RNA
GadX btuB-murI btuB-murI_mRNA
Name: btuB-murI -> btuB-murI_mRNA
Description: Transcription of transcription unit btuB-murI. Reaction inhibition by GadX.
Type: transcription
Pathway Components: btuB-murI - GadX -> btuB-murI_mRNA
Components:
Function Name Type
inhibitor GadX protein
reactant btuB-murI gene
product btuB-murI_mRNA RNA
GadX gadW gadW_mRNA
Name: gadW -> gadW_mRNA
Description: Transcription of transcription unit gadW. Reaction inhibition by GadX.
Type: transcription
Pathway Components: gadW - GadX -> gadW_mRNA
Components:
Function Name Type
inhibitor GadX protein
reactant gadW gene
product gadW_mRNA RNA
GadX ydeNM ydeNM_mRNA
Name: ydeNM -> ydeNM_mRNA
Description: Transcription of transcription unit ydeNM. Reaction inhibition by GadX.
Type: transcription
Pathway Components: ydeNM - GadX -> ydeNM_mRNA
Components:
Function Name Type
inhibitor GadX protein
reactant ydeNM gene
product ydeNM_mRNA RNA
GadX ynfB-speG ynfB-speG_mRNA
Name: ynfB-speG -> ynfB-speG_mRNA
Description: Transcription of transcription unit ynfB-speG. Reaction inhibition by GadX.
Type: transcription
Pathway Components: ynfB-speG - GadX -> ynfB-speG_mRNA
Components:
Function Name Type
inhibitor GadX protein
reactant ynfB-speG gene
product ynfB-speG_mRNA RNA
cadBA_mRNA CadB
Name: cadBA_mRNA -> CadB
Description: Translation of CadB
Type: translation
Pathway Components: cadBA_mRNA -> CadB
Components:
Function Name Type
product CadB protein
reactant cadBA_mRNA RNA
CadB BioDex 1-_Ext + lysine_Ext BioDex 1- + lysine
Name: BioDex 1-_Ext + lysine_Ext -> BioDex 1- + lysine
Description: Transport of BioDex 1-_Ext, lysine_Ext through a bacterial membrane, leading to the presence of BioDex 1-, lysine inside the cell.
Type: transport
Pathway Components: BioDex 1-_Ext + lysine_Ext - CadB -> BioDex 1- + lysine
Components:
Function Name Type
product BioDex 1- simple_molecule
reactant BioDex 1-_Ext simple_molecule
catalyzer CadB protein
product lysine simple_molecule
reactant lysine_Ext simple_molecule
CadB BioDex 1-_Ext BioDex 1-
Name: BioDex 1-_Ext -> BioDex 1-
Description: Transport of BioDex 1-_Ext through a bacterial membrane, leading to the presence of BioDex 1- inside the cell.
Type: transport
Pathway Components: BioDex 1-_Ext - CadB -> BioDex 1-
Components:
Function Name Type
product BioDex 1- simple_molecule
reactant BioDex 1-_Ext simple_molecule
catalyzer CadB protein
cadBA_mRNA CadA
Name: cadBA_mRNA -> CadA
Description: Translation of CadA
Type: translation
Pathway Components: cadBA_mRNA -> CadA
Components:
Function Name Type
product CadA protein
reactant cadBA_mRNA RNA
CadA LdcI spermidine lysine BioDex 1- + CO2
Name: lysine -> BioDex 1- + CO2
Description: Reaction transforming lysine into BioDex 1-, CO2
Type: state transition
Pathway Components: lysine - CadA - LdcI - spermidine -> BioDex 1- + CO2
Components:
Function Name Type
product BioDex 1- simple_molecule
product CO2 simple_molecule
catalyzer CadA protein
catalyzer LdcI protein
reactant lysine simple_molecule
inhibitor spermidine simple_molecule
cadBA_mRNA LdcI
Name: cadBA_mRNA -> LdcI
Description: Translation of LdcI
Type: translation
Pathway Components: cadBA_mRNA -> LdcI
Components:
Function Name Type
product LdcI protein
reactant cadBA_mRNA RNA
hns_mRNA Hns
Name: hns_mRNA -> Hns
Description: Translation of Hns
Type: translation
Pathway Components: hns_mRNA -> Hns
Components:
Function Name Type
product Hns protein
reactant hns_mRNA RNA
glnK-amtB_mRNA GlnK
Name: glnK-amtB_mRNA -> GlnK
Description: Translation of GlnK
Type: translation
Pathway Components: glnK-amtB_mRNA -> GlnK
Components:
Function Name Type
product GlnK simple_molecule
reactant glnK-amtB_mRNA RNA
glnK-amtB_mRNA AmtB
Name: glnK-amtB_mRNA -> AmtB
Description: Translation of AmtB
Type: translation
Pathway Components: glnK-amtB_mRNA -> AmtB
Components:
Function Name Type
product AmtB protein
reactant glnK-amtB_mRNA RNA
AmtB ammonium_Ext ammonium
Name: ammonium_Ext -> ammonium
Description: Transport of ammonium_Ext through a bacterial membrane, leading to the presence of ammonium inside the cell.
Type: transport
Pathway Components: ammonium_Ext - AmtB -> ammonium
Components:
Function Name Type
catalyzer AmtB protein
product ammonium simple_molecule
reactant ammonium_Ext simple_molecule
hdeD_mRNA HdeD
Name: hdeD_mRNA -> HdeD
Description: Translation of HdeD
Type: translation
Pathway Components: hdeD_mRNA -> HdeD
Components:
Function Name Type
product HdeD protein
reactant hdeD_mRNA RNA
glsA-ybaT_mRNA GlsA
Name: glsA-ybaT_mRNA -> GlsA
Description: Translation of GlsA
Type: translation
Pathway Components: glsA-ybaT_mRNA -> GlsA
Components:
Function Name Type
product GlsA protein
reactant glsA-ybaT_mRNA RNA
AsnB GlsA glutamine L-glutamate + ammonium
Name: glutamine -> L-glutamate + ammonium
Description: Reaction transforming glutamine into L-glutamate, ammonium
Type: state transition
Pathway Components: glutamine - AsnB - GlsA -> L-glutamate + ammonium
Components:
Function Name Type
catalyzer AsnB protein
catalyzer GlsA protein
product L-glutamate simple_molecule
product ammonium simple_molecule
reactant glutamine simple_molecule
glsA-ybaT_mRNA YbaT
Name: glsA-ybaT_mRNA -> YbaT
Description: Translation of YbaT
Type: translation
Pathway Components: glsA-ybaT_mRNA -> YbaT
Components:
Function Name Type
product YbaT protein
reactant glsA-ybaT_mRNA RNA
rpoS_mRNA RpoS
Name: rpoS_mRNA -> RpoS
Description: Translation of RpoS
Type: translation
Pathway Components: rpoS_mRNA -> RpoS
Components:
Function Name Type
product RpoS protein
reactant rpoS_mRNA RNA
RpoA + RpoB + RpoS + RpoC RpoB-RpoC-RpoA-RpoS
Name: RpoA + RpoB + RpoS + RpoC -> RpoB-RpoC-RpoA-RpoS
Description: Reaction transforming RpoA, RpoB, RpoS, RpoC into RpoB-RpoC-RpoA-RpoS
Type: state transition
Pathway Components: RpoA + RpoB + RpoS + RpoC -> RpoB-RpoC-RpoA-RpoS
Components:
Function Name Type
reactant RpoA protein
reactant RpoB protein
product RpoB-RpoC-RpoA-RpoS complex
reactant RpoC protein
reactant RpoS protein
uspE_mRNA UspE
Name: uspE_mRNA -> UspE
Description: Translation of UspE
Type: translation
Pathway Components: uspE_mRNA -> UspE
Components:
Function Name Type
product UspE protein
reactant uspE_mRNA RNA
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAX_mRNA -> GadA
Components:
Function Name Type
product GadA protein
reactant gadAX_mRNA RNA
GadA GadB L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA - GadB -> GABA + CO2
Components:
Function Name Type
product CO2 simple_molecule
product GABA simple_molecule
catalyzer GadA protein
catalyzer GadB protein
reactant L-glutamate simple_molecule
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAX_mRNA -> GadX
Components:
Function Name Type
product GadX protein
reactant gadAX_mRNA RNA
gadEF_mRNA GadE
Name: gadEF_mRNA -> GadE
Description: Translation of GadE
Type: translation
Pathway Components: gadEF_mRNA -> GadE
Components:
Function Name Type
product GadE protein
reactant gadEF_mRNA RNA
GadE + RcsB RcsB-GadE
Name: GadE + RcsB -> RcsB-GadE
Description: Reaction transforming GadE, RcsB into RcsB-GadE
Type: state transition
Pathway Components: GadE + RcsB -> RcsB-GadE
Components:
Function Name Type
reactant GadE protein
reactant RcsB protein
product RcsB-GadE complex
gadEF_mRNA RNA:GadF
Name: gadEF_mRNA -> RNA:GadF
Description: Translation of RNA:GadF
Type: translation
Pathway Components: gadEF_mRNA -> RNA:GadF
Components:
Function Name Type
product RNA:GadF protein
reactant gadEF_mRNA RNA
ydeNM_mRNA YdeN
Name: ydeNM_mRNA -> YdeN
Description: Translation of YdeN
Type: translation
Pathway Components: ydeNM_mRNA -> YdeN
Components:
Function Name Type
product YdeN protein
reactant ydeNM_mRNA RNA
ydeNM_mRNA YdeM
Name: ydeNM_mRNA -> YdeM
Description: Translation of YdeM
Type: translation
Pathway Components: ydeNM_mRNA -> YdeM
Components:
Function Name Type
product YdeM protein
reactant ydeNM_mRNA RNA
gadEF-mdtEF_mRNA GadE
Name: gadEF-mdtEF_mRNA -> GadE
Description: Translation of GadE
Type: translation
Pathway Components: gadEF-mdtEF_mRNA -> GadE
Components:
Function Name Type
product GadE protein
reactant gadEF-mdtEF_mRNA RNA
gadEF-mdtEF_mRNA RNA:GadF
Name: gadEF-mdtEF_mRNA -> RNA:GadF
Description: Translation of RNA:GadF
Type: translation
Pathway Components: gadEF-mdtEF_mRNA -> RNA:GadF
Components:
Function Name Type
product RNA:GadF protein
reactant gadEF-mdtEF_mRNA RNA
gadEF-mdtEF_mRNA MdtE
Name: gadEF-mdtEF_mRNA -> MdtE
Description: Translation of MdtE
Type: translation
Pathway Components: gadEF-mdtEF_mRNA -> MdtE
Components:
Function Name Type
product MdtE protein
reactant gadEF-mdtEF_mRNA RNA
TolC + MdtF + MdtE TolC-MdtE-MdtF
Name: TolC + MdtF + MdtE -> TolC-MdtE-MdtF
Description: Reaction transforming TolC, MdtF, MdtE into TolC-MdtE-MdtF
Type: state transition
Pathway Components: TolC + MdtF + MdtE -> TolC-MdtE-MdtF
Components:
Function Name Type
reactant MdtE protein
reactant MdtF protein
reactant TolC protein
product TolC-MdtE-MdtF complex
TolC-MdtE-MdtF drug_Ext drug
Name: drug_Ext -> drug
Description: Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.
Type: transport
Pathway Components: drug_Ext - TolC-MdtE-MdtF -> drug
Components:
Function Name Type
catalyzer TolC-MdtE-MdtF complex
product drug simple_molecule
reactant drug_Ext simple_molecule
gadEF-mdtEF_mRNA MdtF
Name: gadEF-mdtEF_mRNA -> MdtF
Description: Translation of MdtF
Type: translation
Pathway Components: gadEF-mdtEF_mRNA -> MdtF
Components:
Function Name Type
product MdtF protein
reactant gadEF-mdtEF_mRNA RNA
lon_mRNA Lon
Name: lon_mRNA -> Lon
Description: Translation of Lon
Type: translation
Pathway Components: lon_mRNA -> Lon
Components:
Function Name Type
product Lon protein
reactant lon_mRNA RNA
Lon protein peptide
Name: protein -> peptide
Description: Reaction transforming protein into peptide
Type: state transition
Pathway Components: protein - Lon -> peptide
Components:
Function Name Type
catalyzer Lon protein
product peptide simple_molecule
reactant protein simple_molecule
ynfB-speG_mRNA YnfB
Name: ynfB-speG_mRNA -> YnfB
Description: Translation of YnfB
Type: translation
Pathway Components: ynfB-speG_mRNA -> YnfB
Components:
Function Name Type
product YnfB protein
reactant ynfB-speG_mRNA RNA
ynfB-speG_mRNA SpeG
Name: ynfB-speG_mRNA -> SpeG
Description: Translation of SpeG
Type: translation
Pathway Components: ynfB-speG_mRNA -> SpeG
Components:
Function Name Type
product SpeG protein
reactant ynfB-speG_mRNA RNA
SpeG α,ω-diamine + acetyl-CoA N-acetyl-diamine + coenzyme A
Name: α,ω-diamine + acetyl-CoA -> N-acetyl-diamine + coenzyme A
Description: Reaction transforming α,ω-diamine, acetyl-CoA into N-acetyl-diamine, coenzyme A
Type: state transition
Pathway Components: α,ω-diamine + acetyl-CoA - SpeG -> N-acetyl-diamine + coenzyme A
Components:
Function Name Type
reactant α,ω-diamine simple_molecule
product N-acetyl-diamine simple_molecule
catalyzer SpeG protein
reactant acetyl-CoA simple_molecule
product coenzyme A simple_molecule
SpeG spermidine + acetyl-CoA N8-acetylspermidine + coenzyme A
Name: spermidine + acetyl-CoA -> N8-acetylspermidine + coenzyme A
Description: Reaction transforming spermidine, acetyl-CoA into N8-acetylspermidine, coenzyme A
Type: state transition
Pathway Components: spermidine + acetyl-CoA - SpeG -> N8-acetylspermidine + coenzyme A
Components:
Function Name Type
product N8-acetylspermidine simple_molecule
catalyzer SpeG protein
reactant acetyl-CoA simple_molecule
product coenzyme A simple_molecule
reactant spermidine simple_molecule
SpeG acetyl-CoA + spermidine N-acetylspermidine + coenzyme A
Name: acetyl-CoA + spermidine -> N-acetylspermidine + coenzyme A
Description: Reaction transforming acetyl-CoA, spermidine into N-acetylspermidine, coenzyme A
Type: state transition
Pathway Components: acetyl-CoA + spermidine - SpeG -> N-acetylspermidine + coenzyme A
Components:
Function Name Type
product N-acetylspermidine simple_molecule
catalyzer SpeG protein
reactant acetyl-CoA simple_molecule
product coenzyme A simple_molecule
reactant spermidine simple_molecule
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeA
Components:
Function Name Type