RegulonDB

Name:

csgDEFG -> csgDEFG_mRNA

Description:

Transcription of transcription unit csgDEFG. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

csgDEFG - FliZ -> csgDEFG_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	csgDEFG	gene
product	csgDEFG_mRNA	RNA

Name:

flhDC -> flhDC_mRNA

Description:

Transcription of transcription unit flhDC. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

flhDC - FliZ -> flhDC_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	flhDC	gene
product	flhDC_mRNA	RNA

Name:

gadBC -> gadBC_mRNA

Description:

Transcription of transcription unit gadBC. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

gadBC - FliZ -> gadBC_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	gadBC	gene
product	gadBC_mRNA	RNA

Name:

gadEF-mdtEF -> gadEF-mdtEF_mRNA

Description:

Transcription of transcription unit gadEF-mdtEF. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

gadEF-mdtEF - FliZ -> gadEF-mdtEF_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	gadEF-mdtEF	gene
product	gadEF-mdtEF_mRNA	RNA

Name:

hdeAB-yhiD -> hdeAB-yhiD_mRNA

Description:

Transcription of transcription unit hdeAB-yhiD. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

hdeAB-yhiD - FliZ -> hdeAB-yhiD_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	hdeAB-yhiD	gene
product	hdeAB-yhiD_mRNA	RNA

Name:

mlrA -> mlrA_mRNA

Description:

Transcription of transcription unit mlrA. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

mlrA - FliZ -> mlrA_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	mlrA	gene
product	mlrA_mRNA	RNA

Name:

osmY -> osmY_mRNA

Description:

Transcription of transcription unit osmY. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

osmY - FliZ -> osmY_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	osmY	gene
product	osmY_mRNA	RNA

Name:

pdeR -> pdeR_mRNA

Description:

Transcription of transcription unit pdeR. Reaction inhibition by FliZ.

Type:

transcription

Pathway Components:

pdeR - FliZ -> pdeR_mRNA

Components:

Function	Name	Type
inhibitor	FliZ	protein
reactant	pdeR	gene
product	pdeR_mRNA	RNA

Name:

gadBC_mRNA -> GadB

Description:

Translation of GadB

Type:

translation

Pathway Components:

gadBC_mRNA -> GadB

Components:

Function	Name	Type
product	GadB	protein
reactant	gadBC_mRNA	RNA

Name:

L-glutamate -> GABA + CO2

Description:

Reaction transforming L-glutamate into GABA, CO2

Type:

state transition

Pathway Components:

L-glutamate - GadB -> GABA + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
product	GABA	simple_molecule
catalyzer	GadB	protein
reactant	L-glutamate	simple_molecule

Name:

gadBC_mRNA -> GadC

Description:

Translation of GadC

Type:

translation

Pathway Components:

gadBC_mRNA -> GadC

Components:

Function	Name	Type
product	GadC	protein
reactant	gadBC_mRNA	RNA

Name:

L-glutamate_Ext + GABA_Ext -> L-glutamate + GABA

Description:

Transport of L-glutamate_Ext, GABA_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the cell.

Type:

transport

Pathway Components:

L-glutamate_Ext + GABA_Ext - GadC -> L-glutamate + GABA

Components:

Function	Name	Type
product	GABA	simple_molecule
reactant	GABA_Ext	simple_molecule
catalyzer	GadC	protein
product	L-glutamate	simple_molecule
reactant	L-glutamate_Ext	simple_molecule

Name:

csgDEFG_mRNA -> CsgD

Description:

Translation of CsgD

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgD

Components:

Function	Name	Type
product	CsgD	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgE

Description:

Translation of CsgE

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgE

Components:

Function	Name	Type
product	CsgE	protein
reactant	csgDEFG_mRNA	RNA

Name:

CsgG + CsgE -> CsgE-CsgG

Description:

Reaction transforming CsgG, CsgE into CsgE-CsgG

Type:

state transition

Pathway Components:

CsgG + CsgE -> CsgE-CsgG

Components:

Function	Name	Type
reactant	CsgE	protein
product	CsgE-CsgG	complex
reactant	CsgG	protein

Name:

CsgA_Ext -> CsgA

Description:

Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.

Type:

transport

Pathway Components:

CsgA_Ext - CsgE-CsgG -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	CsgA_Ext	simple_molecule
catalyzer	CsgE-CsgG	complex

Name:

csgDEFG_mRNA -> CsgF

Description:

Translation of CsgF

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgF

Components:

Function	Name	Type
product	CsgF	protein
reactant	csgDEFG_mRNA	RNA

Name:

csgDEFG_mRNA -> CsgG

Description:

Translation of CsgG

Type:

translation

Pathway Components:

csgDEFG_mRNA -> CsgG

Components:

Function	Name	Type
product	CsgG	protein
reactant	csgDEFG_mRNA	RNA

Name:

osmY_mRNA -> OsmY

Description:

Translation of OsmY

Type:

translation

Pathway Components:

osmY_mRNA -> OsmY

Components:

Function	Name	Type
product	OsmY	protein
reactant	osmY_mRNA	RNA

Name:

csgBAC_mRNA -> CsgB

Description:

Translation of CsgB

Type:

translation

Pathway Components:

csgBAC_mRNA -> CsgB

Components:

Function	Name	Type
product	CsgB	protein
reactant	csgBAC_mRNA	RNA

Name:

csgBAC_mRNA -> CsgA

Description:

Translation of CsgA

Type:

translation

Pathway Components:

csgBAC_mRNA -> CsgA

Components:

Function	Name	Type
product	CsgA	simple_molecule
reactant	csgBAC_mRNA	RNA

Name:

csgBAC_mRNA -> CsgC

Description:

Translation of CsgC

Type:

translation

Pathway Components:

csgBAC_mRNA -> CsgC

Components:

Function	Name	Type
product	CsgC	protein
reactant	csgBAC_mRNA	RNA

Name:

mlrA_mRNA -> MlrA

Description:

Translation of MlrA

Type:

translation

Pathway Components:

mlrA_mRNA -> MlrA

Components:

Function	Name	Type
product	MlrA	protein
reactant	mlrA_mRNA	RNA

Name:

flhDC_mRNA -> FlhD

Description:

Translation of FlhD

Type:

translation

Pathway Components:

flhDC_mRNA -> FlhD

Components:

Function	Name	Type
product	FlhD	protein
reactant	flhDC_mRNA	RNA

Name:

FlhD + FlhC -> FlhD-FlhC

Description:

Reaction transforming FlhD, FlhC into FlhD-FlhC

Type:

state transition

Pathway Components:

FlhD + FlhC -> FlhD-FlhC

Components:

Function	Name	Type
reactant	FlhC	protein
reactant	FlhD	protein
product	FlhD-FlhC	complex

Name:

flhDC_mRNA -> FlhC

Description:

Translation of FlhC

Type:

translation

Pathway Components:

flhDC_mRNA -> FlhC

Components:

Function	Name	Type
product	FlhC	protein
reactant	flhDC_mRNA	RNA

Name:

hdeAB-yhiD_mRNA -> HdeA

Description:

Translation of HdeA

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> HdeA

Components:

Function	Name	Type
product	HdeA	protein
reactant	hdeAB-yhiD_mRNA	RNA

Name:

hdeAB-yhiD_mRNA -> HdeB

Description:

Translation of HdeB

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> HdeB

Components:

Function	Name	Type
product	HdeB	protein
reactant	hdeAB-yhiD_mRNA	RNA

Name:

hdeAB-yhiD_mRNA -> YhiD

Description:

Translation of YhiD

Type:

translation

Pathway Components:

hdeAB-yhiD_mRNA -> YhiD

Components:

Function	Name	Type
product	YhiD	protein
reactant	hdeAB-yhiD_mRNA	RNA

Name:

gadEF-mdtEF_mRNA -> GadE

Description:

Translation of GadE

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> GadE

Components:

Function	Name	Type
product	GadE	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

GadE + RcsB -> RcsB-GadE

Description:

Reaction transforming GadE, RcsB into RcsB-GadE

Type:

state transition

Pathway Components:

GadE + RcsB -> RcsB-GadE

Components:

Function	Name	Type
reactant	GadE	protein
reactant	RcsB	protein
product	RcsB-GadE	complex

Name:

gadEF-mdtEF_mRNA -> RNA:GadF

Description:

Translation of RNA:GadF

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> RNA:GadF

Components:

Function	Name	Type
product	RNA:GadF	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

gadEF-mdtEF_mRNA -> MdtE

Description:

Translation of MdtE

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> MdtE

Components:

Function	Name	Type
product	MdtE	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

MdtE + TolC + MdtF -> TolC-MdtE-MdtF

Description:

Reaction transforming MdtE, TolC, MdtF into TolC-MdtE-MdtF

Type:

state transition

Pathway Components:

MdtE + TolC + MdtF -> TolC-MdtE-MdtF

Components:

Function	Name	Type
reactant	MdtE	protein
reactant	MdtF	protein
reactant	TolC	protein
product	TolC-MdtE-MdtF	complex

Name:

drug_Ext -> drug

Description:

Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.

Type:

transport

Pathway Components:

drug_Ext - TolC-MdtE-MdtF -> drug

Components:

Function	Name	Type
catalyzer	TolC-MdtE-MdtF	complex
product	drug	simple_molecule
reactant	drug_Ext	simple_molecule

Name:

gadEF-mdtEF_mRNA -> MdtF

Description:

Translation of MdtF

Type:

translation

Pathway Components:

gadEF-mdtEF_mRNA -> MdtF

Components:

Function	Name	Type
product	MdtF	protein
reactant	gadEF-mdtEF_mRNA	RNA

Name:

pdeR_mRNA -> PdeR

Description:

Translation of PdeR

Type:

translation

Pathway Components:

pdeR_mRNA -> PdeR

Components:

Function	Name	Type
product	PdeR	protein
reactant	pdeR_mRNA	RNA

Name:

c-di-GMP -> 5'pGpG

Description:

Reaction transforming c-di-GMP into 5'pGpG

Type:

state transition

Pathway Components:

c-di-GMP - PdeR -> 5'pGpG

Components:

Function	Name	Type
product	5'pGpG	simple_molecule
catalyzer	PdeR	protein
reactant	c-di-GMP	simple_molecule

Gensor Unit Map