RegulonDB RegulonDB

FlhDC Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-malate CcmA CcmB CcmC CcmD CcmE CcmF CcmG CcmH FlgA FlgB FlgC FlgD FlgE FlgF FlgG FlgH FlgI FlgJ FlgM FlgN FlhA FlhB FlhDC FlhE FliA FliD FliE FliF FliG FliH FliI FliJ FliK FliL FliM FliN FliO FliP FliQ FliR FliS FliT FliY FliZ GlpA GlpB GlpC GltI GltJ GltK GltL HydN HydB HypF asp asp_Ext L-glutamate L-glutamate_Ext Mdh MglA MglB MglC NapA NapB NapC NapD NapF NapG NapH NrfA NrfB NrfC NrfD NrfE NrfF NrfG PpdA PpdB PpdC RecC This Gensor Unit is not yet available YcgR YecR YgbK YgdB YhjH a 5'-phosphooligonucleotide a double stranded DNA a reduced cytochrome c552 ammonia an electron-transfer-related quinol an electron-transfer-related quinone an oxidized cytochrome c552 an ubiquinol ubiquinone beta-D-galactose beta-D-galactose_Ext carbamoyl-P cyclic di-3',5'-guanylate DHAP PP flgAMN flgAMN_mRNA flgBCDEFGHIJ flgBCDEFGHIJ_mRNA flhBAE flhBAE_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available fliDST fliDST_mRNA fliE fliE_mRNA fliFGHIJK fliFGHIJK_mRNA fliLMNOPQR fliLMNOPQR_mRNA glpABC glpABC_mRNA gltI-sroC-gltJKL gltI-sroC-gltJKL_mRNA hydN-hypF hydN-hypF_mRNA HypE 5'pGpG mdh mdh_mRNA b-methyl-D-galactoside b-methyl-D-galactoside_Ext mglBAC mglBAC_mRNA napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA nitrate nitrite nrfABCDEFG nrfABCDEFG_mRNA oxalacetate phosphate ppdAB-ygdB-ppdC-recC ppdAB-ygdB-ppdC-recC_mRNA protoheme IX protoheme IX_Ext sn-glycerol-3-phosphate ycgR ycgR_mRNA yecR yecR_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available NapB NapC NapH NapG NapA CcmC CcmE CcmD CcmB CcmA NrfD NrfC NrfB NrfA GltI GltK GltJ GltL MglA MglC MglB GlpA GlpB GlpC phosphate phosphate


Gensor Unit       
Name: FlhDC
Classification:
Groups: Cell motility
Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Replication, recombination and repair
Signal transduction mechanisms
Amino acid transport and metabolism
Intracellular trafficking, secretion, and vesicular transport
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0006754 - ATP biosynthetic process
GO:0032508 - DNA duplex unwinding
GO:0015074 - DNA integration
GO:0006310 - DNA recombination
GO:0006281 - DNA repair
GO:0006352 - DNA-templated transcription, initiation
Read more >
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0009288 - bacterial-type flagellum
GO:0009425 - bacterial-type flagellum basal body
GO:0009431 - bacterial-type flagellum basal body, MS ring
GO:0009426 - bacterial-type flagellum basal body, distal rod
GO:0009427 - bacterial-type flagellum basal body, distal rod, L ring
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring
Read more >
molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0015424 - ATPase-coupled amino acid transmembrane transporter activity
GO:0043211 - ATPase-coupled carbohydrate transmembrane transporter activity
GO:0015439 - ATPase-coupled heme transmembrane transporter activity
GO:0015407 - ATPase-coupled monosaccharide transmembrane transporter activity
Read more >
Components:
  Function Name Type
  simple_molecule 5'-phosphooligonucleotide simple_molecule
  simple_molecule 5'pGpG simple_molecule
  protein CcmA protein
  protein CcmB protein
  protein CcmC protein
  protein CcmD protein
  complex CcmD-CcmB-CcmA-CcmE-CcmC complex
  protein CcmE protein
  complex CcmE-CcmF-CcmG-CcmH complex
  protein CcmF protein
  protein CcmG protein
  protein CcmH protein
  simple_molecule DHAP simple_molecule
  protein FlgA protein
  protein FlgB protein
  protein FlgC protein
  protein FlgD protein
  protein FlgE protein
  protein FlgF protein
  protein FlgG protein
  protein FlgH protein
  protein FlgI protein
  protein FlgJ protein
  protein FlgK protein
  protein FlgL protein
  protein FlgM protein
  protein FlgN protein
  protein FlhA protein
  complex FlhA-FlhB-FliO-FliP-FliQ-FliR-FliH-FliI-FliJ complex
  protein FlhB protein
  protein FlhDC protein
  protein FlhE protein
  protein FliA protein
  complex FliA-RpoB-RpoC-RpoA complex
  protein FliC protein
  protein FliD protein
  protein FliE protein
  protein FliF protein
  protein FliG protein
  complex FliG-FliM-FliN complex
  protein FliH protein
  protein FliI protein
  protein FliJ protein
  protein FliK protein
  protein FliL protein
  complex FliL-FliE-FliF-FlgI-FlgG-FlgF-FlgC-FlgB-MotB-MotA-FlgH-FliG-FliM-FliN-FliJ-FliI-FliH-FliR-FliQ-FliP-FliO-FlhB-FlhA-FlgE-FlgK-FlgL-FliC-FliD complex
  protein FliM protein
  protein FliN protein
  complex FliN-FliM-FliG-FlgH-MotA-MotB-FlgB-FlgC-FlgF-FlgG-FlgI-FliF-FliE-FliL complex
  protein FliO protein
  protein FliP protein
  protein FliQ protein
  protein FliR protein
  protein FliS protein
  protein FliT protein
  protein FliZ protein
  protein GlpA protein
  complex GlpA-GlpB-GlpC complex
  protein GlpB protein
  protein GlpC protein
  protein GltI protein
  complex GltI-GltK-GltJ-GltL complex
  protein GltJ protein
  protein GltK protein
  protein GltL protein
  simple_molecule HydB simple_molecule
  protein HydN protein
  simple_molecule HypE simple_molecule
  protein HypF protein
  simple_molecule L,L-homocystine simple_molecule
  simple_molecule L,L-homocystine_Ext simple_molecule
  simple_molecule L-glutamate simple_molecule
  simple_molecule L-glutamate_Ext simple_molecule
  simple_molecule M-DAP simple_molecule
  simple_molecule M-DAP_Ext simple_molecule
  protein Mdh protein
  protein MglA protein
  complex MglA-MglC-MglB complex
  protein MglB protein
  protein MglC protein
  protein MotA protein
  protein MotB protein
  protein NapA protein
  protein NapB protein
  complex NapB-NapA complex
  protein NapC protein
  protein NapD protein
  protein NapF protein
  protein NapG protein
  complex NapG-NapH complex
  protein NapH protein
  protein NrfA protein
  complex NrfA-NrfB complex
  protein NrfB protein
  protein NrfC protein
  protein NrfD protein
  complex NrfD-NrfC complex
  protein NrfE protein
  protein NrfF protein
  protein NrfG protein
  simple_molecule O-carbamoyladenylate simple_molecule
  simple_molecule Oxidized-NapC-proteins simple_molecule
  protein PdeH protein
  protein PpdA protein
  protein PpdB protein
  protein PpdC protein
  protein RNA:SroC protein
  protein RecB protein
  protein RecC protein
  protein RecD protein
  complex RecD-RecC-RecB complex
  simple_molecule Reduced-NapC-proteins simple_molecule
  protein RpoA protein
  protein RpoB protein
  protein RpoC protein
  protein TcyJ protein
  protein TcyL protein
  protein TcyN protein
  complex TcyN-TcyL-TcyJ complex
  simple_molecule UmuB simple_molecule
  protein YcgR protein
  protein YecR protein
  protein YgbK protein
  protein YgdB protein
  simple_molecule a polynucleotide simple_molecule
  simple_molecule a-double-stranded-DNA-with-a-blunt-end simple_molecule
  simple_molecule a-reduced-NrfB-protein simple_molecule
  simple_molecule ammonium simple_molecule
  simple_molecule an-oxidized-NrfB-protein simple_molecule
  simple_molecule aspartate simple_molecule
  simple_molecule aspartate_Ext simple_molecule
  simple_molecule b-methyl-D-galactoside simple_molecule
  simple_molecule b-methyl-D-galactoside_Ext simple_molecule
  simple_molecule c-di-GMP simple_molecule
  simple_molecule carbamoyl-P simple_molecule
  simple_molecule cysteine simple_molecule
  simple_molecule cysteine_Ext simple_molecule
  simple_molecule cystine simple_molecule
  simple_molecule cystine_Ext simple_molecule
  simple_molecule diphosphate simple_molecule
  simple_molecule djenkolate simple_molecule
  simple_molecule djenkolate_Ext simple_molecule
  simple_molecule double stranded DNA simple_molecule
  simple_molecule ferri c-type cytochrome simple_molecule
  gene flgAMN gene
  RNA flgAMN_mRNA RNA
  gene flgBCDEFGHIJ gene
  RNA flgBCDEFGHIJ_mRNA RNA
  gene flgKL gene
  RNA flgKL_mRNA RNA
  gene flhBAE gene
  RNA flhBAE_mRNA RNA
  gene fliAZ-tcyJ gene
  RNA fliAZ-tcyJ_mRNA RNA
  gene fliDST gene
  RNA fliDST_mRNA RNA
  gene fliE gene
  RNA fliE_mRNA RNA
  gene fliFGHIJK gene
  RNA fliFGHIJK_mRNA RNA
  gene fliLMNOPQR gene
  RNA fliLMNOPQR_mRNA RNA
  simple_molecule galactopyranose simple_molecule
  simple_molecule galactopyranose_Ext simple_molecule
  gene glpABC gene
  RNA glpABC_mRNA RNA
  gene gltI-sroC-gltJKL gene
  RNA gltI-sroC-gltJKL_mRNA RNA
  simple_molecule glycerol-3-phosphate simple_molecule
  gene hydN-hypF gene
  RNA hydN-hypF_mRNA RNA
  simple_molecule lanthionine simple_molecule
  simple_molecule lanthionine_Ext simple_molecule
  simple_molecule malate simple_molecule
  gene mdh gene
  RNA mdh_mRNA RNA
  simple_molecule menaquinol simple_molecule
  gene mglBAC gene
  RNA mglBAC_mRNA RNA
  gene napFDAGHBC-ccmABCDEFGH gene
  RNA napFDAGHBC-ccmABCDEFGH_mRNA RNA
  simple_molecule nitrate simple_molecule
  simple_molecule nitrite simple_molecule
  gene nrfABCDEFG gene
  RNA nrfABCDEFG_mRNA RNA
  simple_molecule oxalacetate simple_molecule
  gene pdeH gene
  RNA pdeH_mRNA RNA
  simple_molecule phosphate simple_molecule
  gene ppdAB-ygdB-ppdC-recC gene
  RNA ppdAB-ygdB-ppdC-recC_mRNA RNA
  simple_molecule protoheme IX simple_molecule
  simple_molecule protoheme IX_Ext simple_molecule
  simple_molecule reduced Cytochrome C protein simple_molecule
  simple_molecule single stranded DNA simple_molecule
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinone simple_molecule
  simple_molecule vitamin K2 simple_molecule
  gene ycgR gene
  RNA ycgR_mRNA RNA
  gene yecR gene
  RNA yecR_mRNA RNA
  gene ygbK gene
  RNA ygbK_mRNA RNA


Reactions       
Showing 144 reactions
FlhDC flgAMN flgAMN_mRNA
Name: flgAMN -> flgAMN_mRNA
Description: Transcription of transcription unit flgAMN. Reaction activation by FlhDC.
Type: transcription
Pathway Components: flgAMN - FlhDC -> flgAMN_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant flgAMN gene
product flgAMN_mRNA RNA
FlhDC flgBCDEFGHIJ flgBCDEFGHIJ_mRNA
Name: flgBCDEFGHIJ -> flgBCDEFGHIJ_mRNA
Description: Transcription of transcription unit flgBCDEFGHIJ. Reaction activation by FlhDC.
Type: transcription
Pathway Components: flgBCDEFGHIJ - FlhDC -> flgBCDEFGHIJ_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant flgBCDEFGHIJ gene
product flgBCDEFGHIJ_mRNA RNA
FlhDC flgKL flgKL_mRNA
Name: flgKL -> flgKL_mRNA
Description: Transcription of transcription unit flgKL. Reaction activation by FlhDC.
Type: transcription
Pathway Components: flgKL - FlhDC -> flgKL_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant flgKL gene
product flgKL_mRNA RNA
FlhDC flhBAE flhBAE_mRNA
Name: flhBAE -> flhBAE_mRNA
Description: Transcription of transcription unit flhBAE. Reaction activation by FlhDC.
Type: transcription
Pathway Components: flhBAE - FlhDC -> flhBAE_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant flhBAE gene
product flhBAE_mRNA RNA
FlhDC fliAZ-tcyJ fliAZ-tcyJ_mRNA
Name: fliAZ-tcyJ -> fliAZ-tcyJ_mRNA
Description: Transcription of transcription unit fliAZ-tcyJ. Reaction activation by FlhDC.
Type: transcription
Pathway Components: fliAZ-tcyJ - FlhDC -> fliAZ-tcyJ_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant fliAZ-tcyJ gene
product fliAZ-tcyJ_mRNA RNA
FlhDC fliDST fliDST_mRNA
Name: fliDST -> fliDST_mRNA
Description: Transcription of transcription unit fliDST. Reaction activation by FlhDC.
Type: transcription
Pathway Components: fliDST - FlhDC -> fliDST_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant fliDST gene
product fliDST_mRNA RNA
FlhDC fliE fliE_mRNA
Name: fliE -> fliE_mRNA
Description: Transcription of transcription unit fliE. Reaction activation by FlhDC.
Type: transcription
Pathway Components: fliE - FlhDC -> fliE_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant fliE gene
product fliE_mRNA RNA
FlhDC fliFGHIJK fliFGHIJK_mRNA
Name: fliFGHIJK -> fliFGHIJK_mRNA
Description: Transcription of transcription unit fliFGHIJK. Reaction activation by FlhDC.
Type: transcription
Pathway Components: fliFGHIJK - FlhDC -> fliFGHIJK_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant fliFGHIJK gene
product fliFGHIJK_mRNA RNA
FlhDC fliLMNOPQR fliLMNOPQR_mRNA
Name: fliLMNOPQR -> fliLMNOPQR_mRNA
Description: Transcription of transcription unit fliLMNOPQR. Reaction activation by FlhDC.
Type: transcription
Pathway Components: fliLMNOPQR - FlhDC -> fliLMNOPQR_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant fliLMNOPQR gene
product fliLMNOPQR_mRNA RNA
FlhDC glpABC glpABC_mRNA
Name: glpABC -> glpABC_mRNA
Description: Transcription of transcription unit glpABC. Reaction activation by FlhDC.
Type: transcription
Pathway Components: glpABC - FlhDC -> glpABC_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant glpABC gene
product glpABC_mRNA RNA
FlhDC gltI-sroC-gltJKL gltI-sroC-gltJKL_mRNA
Name: gltI-sroC-gltJKL -> gltI-sroC-gltJKL_mRNA
Description: Transcription of transcription unit gltI-sroC-gltJKL. Reaction activation by FlhDC.
Type: transcription
Pathway Components: gltI-sroC-gltJKL - FlhDC -> gltI-sroC-gltJKL_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant gltI-sroC-gltJKL gene
product gltI-sroC-gltJKL_mRNA RNA
FlhDC hydN-hypF hydN-hypF_mRNA
Name: hydN-hypF -> hydN-hypF_mRNA
Description: Transcription of transcription unit hydN-hypF. Reaction activation by FlhDC.
Type: transcription
Pathway Components: hydN-hypF - FlhDC -> hydN-hypF_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant hydN-hypF gene
product hydN-hypF_mRNA RNA
FlhDC napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA
Name: napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA
Description: Transcription of transcription unit napFDAGHBC-ccmABCDEFGH. Reaction activation by FlhDC.
Type: transcription
Pathway Components: napFDAGHBC-ccmABCDEFGH - FlhDC -> napFDAGHBC-ccmABCDEFGH_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant napFDAGHBC-ccmABCDEFGH gene
product napFDAGHBC-ccmABCDEFGH_mRNA RNA
FlhDC nrfABCDEFG nrfABCDEFG_mRNA
Name: nrfABCDEFG -> nrfABCDEFG_mRNA
Description: Transcription of transcription unit nrfABCDEFG. Reaction activation by FlhDC.
Type: transcription
Pathway Components: nrfABCDEFG - FlhDC -> nrfABCDEFG_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant nrfABCDEFG gene
product nrfABCDEFG_mRNA RNA
FlhDC pdeH pdeH_mRNA
Name: pdeH -> pdeH_mRNA
Description: Transcription of transcription unit pdeH. Reaction activation by FlhDC.
Type: transcription
Pathway Components: pdeH - FlhDC -> pdeH_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant pdeH gene
product pdeH_mRNA RNA
FlhDC ppdAB-ygdB-ppdC-recC ppdAB-ygdB-ppdC-recC_mRNA
Name: ppdAB-ygdB-ppdC-recC -> ppdAB-ygdB-ppdC-recC_mRNA
Description: Transcription of transcription unit ppdAB-ygdB-ppdC-recC. Reaction activation by FlhDC.
Type: transcription
Pathway Components: ppdAB-ygdB-ppdC-recC - FlhDC -> ppdAB-ygdB-ppdC-recC_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant ppdAB-ygdB-ppdC-recC gene
product ppdAB-ygdB-ppdC-recC_mRNA RNA
FlhDC ycgR ycgR_mRNA
Name: ycgR -> ycgR_mRNA
Description: Transcription of transcription unit ycgR. Reaction activation by FlhDC.
Type: transcription
Pathway Components: ycgR - FlhDC -> ycgR_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant ycgR gene
product ycgR_mRNA RNA
FlhDC yecR yecR_mRNA
Name: yecR -> yecR_mRNA
Description: Transcription of transcription unit yecR. Reaction activation by FlhDC.
Type: transcription
Pathway Components: yecR - FlhDC -> yecR_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant yecR gene
product yecR_mRNA RNA
FlhDC ygbK ygbK_mRNA
Name: ygbK -> ygbK_mRNA
Description: Transcription of transcription unit ygbK. Reaction activation by FlhDC.
Type: transcription
Pathway Components: ygbK - FlhDC -> ygbK_mRNA
Components:
Function Name Type
activator FlhDC protein
reactant ygbK gene
product ygbK_mRNA RNA
FlhDC mdh mdh_mRNA
Name: mdh -> mdh_mRNA
Description: Transcription of transcription unit mdh. Reaction inhibition by FlhDC.
Type: transcription
Pathway Components: mdh - FlhDC -> mdh_mRNA
Components:
Function Name Type
inhibitor FlhDC protein
reactant mdh gene
product mdh_mRNA RNA
FlhDC mglBAC mglBAC_mRNA
Name: mglBAC -> mglBAC_mRNA
Description: Transcription of transcription unit mglBAC. Reaction inhibition by FlhDC.
Type: transcription
Pathway Components: mglBAC - FlhDC -> mglBAC_mRNA
Components:
Function Name Type
inhibitor FlhDC protein
reactant mglBAC gene
product mglBAC_mRNA RNA
ygbK_mRNA YgbK
Name: ygbK_mRNA -> YgbK
Description: Translation of YgbK
Type: translation
Pathway Components: ygbK_mRNA -> YgbK
Components:
Function Name Type
product YgbK protein
reactant ygbK_mRNA RNA
ppdAB-ygdB-ppdC-recC_mRNA PpdA
Name: ppdAB-ygdB-ppdC-recC_mRNA -> PpdA
Description: Translation of PpdA
Type: translation
Pathway Components: ppdAB-ygdB-ppdC-recC_mRNA -> PpdA
Components:
Function Name Type
product PpdA protein
reactant ppdAB-ygdB-ppdC-recC_mRNA RNA
ppdAB-ygdB-ppdC-recC_mRNA PpdB
Name: ppdAB-ygdB-ppdC-recC_mRNA -> PpdB
Description: Translation of PpdB
Type: translation
Pathway Components: ppdAB-ygdB-ppdC-recC_mRNA -> PpdB
Components:
Function Name Type
product PpdB protein
reactant ppdAB-ygdB-ppdC-recC_mRNA RNA
ppdAB-ygdB-ppdC-recC_mRNA YgdB
Name: ppdAB-ygdB-ppdC-recC_mRNA -> YgdB
Description: Translation of YgdB
Type: translation
Pathway Components: ppdAB-ygdB-ppdC-recC_mRNA -> YgdB
Components:
Function Name Type
product YgdB protein
reactant ppdAB-ygdB-ppdC-recC_mRNA RNA
ppdAB-ygdB-ppdC-recC_mRNA PpdC
Name: ppdAB-ygdB-ppdC-recC_mRNA -> PpdC
Description: Translation of PpdC
Type: translation
Pathway Components: ppdAB-ygdB-ppdC-recC_mRNA -> PpdC
Components:
Function Name Type
product PpdC protein
reactant ppdAB-ygdB-ppdC-recC_mRNA RNA
ppdAB-ygdB-ppdC-recC_mRNA RecC
Name: ppdAB-ygdB-ppdC-recC_mRNA -> RecC
Description: Translation of RecC
Type: translation
Pathway Components: ppdAB-ygdB-ppdC-recC_mRNA -> RecC
Components:
Function Name Type
product RecC protein
reactant ppdAB-ygdB-ppdC-recC_mRNA RNA
RecC + RecB + RecD RecD-RecC-RecB
Name: RecC + RecB + RecD -> RecD-RecC-RecB
Description: Reaction transforming RecC, RecB, RecD into RecD-RecC-RecB
Type: state transition
Pathway Components: RecC + RecB + RecD -> RecD-RecC-RecB
Components:
Function Name Type
reactant RecB protein
reactant RecC protein
reactant RecD protein
product RecD-RecC-RecB complex
RecD-RecC-RecB a-double-stranded-DNA-with-a-blunt-end + UmuB a polynucleotide + phosphate
Name: a-double-stranded-DNA-with-a-blunt-end + UmuB -> a polynucleotide + phosphate
Description: Reaction transforming a-double-stranded-DNA-with-a-blunt-end, UmuB into a polynucleotide, phosphate
Type: state transition
Pathway Components: a-double-stranded-DNA-with-a-blunt-end + UmuB - RecD-RecC-RecB -> a polynucleotide + phosphate
Components:
Function Name Type
catalyzer RecD-RecC-RecB complex
reactant UmuB simple_molecule
product a polynucleotide simple_molecule
reactant a-double-stranded-DNA-with-a-blunt-end simple_molecule
product phosphate simple_molecule
RecD-RecC-RecB double stranded DNA 5'-phosphooligonucleotide
Name: double stranded DNA -> 5'-phosphooligonucleotide
Description: Reaction transforming double stranded DNA into 5'-phosphooligonucleotide
Type: state transition
Pathway Components: double stranded DNA - RecD-RecC-RecB -> 5'-phosphooligonucleotide
Components:
Function Name Type
product 5'-phosphooligonucleotide simple_molecule
catalyzer RecD-RecC-RecB complex
reactant double stranded DNA simple_molecule
RecD-RecC-RecB single stranded DNA 5'-phosphooligonucleotide
Name: single stranded DNA -> 5'-phosphooligonucleotide
Description: Reaction transforming single stranded DNA into 5'-phosphooligonucleotide
Type: state transition
Pathway Components: single stranded DNA - RecD-RecC-RecB -> 5'-phosphooligonucleotide
Components:
Function Name Type
product 5'-phosphooligonucleotide simple_molecule
catalyzer RecD-RecC-RecB complex
reactant single stranded DNA simple_molecule
fliAZ-tcyJ_mRNA FliA
Name: fliAZ-tcyJ_mRNA -> FliA
Description: Translation of FliA
Type: translation
Pathway Components: fliAZ-tcyJ_mRNA -> FliA
Components:
Function Name Type
product FliA protein
reactant fliAZ-tcyJ_mRNA RNA
RpoB + RpoA + FliA + RpoC FliA-RpoB-RpoC-RpoA
Name: RpoB + RpoA + FliA + RpoC -> FliA-RpoB-RpoC-RpoA
Description: Reaction transforming RpoB, RpoA, FliA, RpoC into FliA-RpoB-RpoC-RpoA
Type: state transition
Pathway Components: RpoB + RpoA + FliA + RpoC -> FliA-RpoB-RpoC-RpoA
Components:
Function Name Type
reactant FliA protein
product FliA-RpoB-RpoC-RpoA complex
reactant RpoA protein
reactant RpoB protein
reactant RpoC protein
fliAZ-tcyJ_mRNA FliZ
Name: fliAZ-tcyJ_mRNA -> FliZ
Description: Translation of FliZ
Type: translation
Pathway Components: fliAZ-tcyJ_mRNA -> FliZ
Components:
Function Name Type
product FliZ protein
reactant fliAZ-tcyJ_mRNA RNA
fliAZ-tcyJ_mRNA TcyJ
Name: fliAZ-tcyJ_mRNA -> TcyJ
Description: Translation of TcyJ
Type: translation
Pathway Components: fliAZ-tcyJ_mRNA -> TcyJ
Components:
Function Name Type
product TcyJ protein
reactant fliAZ-tcyJ_mRNA RNA
TcyJ + TcyN + TcyL TcyN-TcyL-TcyJ
Name: TcyJ + TcyN + TcyL -> TcyN-TcyL-TcyJ
Description: Reaction transforming TcyJ, TcyN, TcyL into TcyN-TcyL-TcyJ
Type: state transition
Pathway Components: TcyJ + TcyN + TcyL -> TcyN-TcyL-TcyJ
Components:
Function Name Type
reactant TcyJ protein
reactant TcyL protein
reactant TcyN protein
product TcyN-TcyL-TcyJ complex
M-DAP TcyN-TcyL-TcyJ cysteine cystine_Ext cystine
Name: cystine_Ext -> cystine
Description: Transport of cystine_Ext through a bacterial membrane, leading to the presence of cystine inside the cell.
Type: transport
Pathway Components: cystine_Ext - TcyN-TcyL-TcyJ - M-DAP - cysteine -> cystine
Components:
Function Name Type
inhibitor M-DAP simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
inhibitor cysteine simple_molecule
product cystine simple_molecule
reactant cystine_Ext simple_molecule
TcyN-TcyL-TcyJ cysteine_Ext cysteine
Name: cysteine_Ext -> cysteine
Description: Transport of cysteine_Ext through a bacterial membrane, leading to the presence of cysteine inside the cell.
Type: transport
Pathway Components: cysteine_Ext - TcyN-TcyL-TcyJ -> cysteine
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
product cysteine simple_molecule
reactant cysteine_Ext simple_molecule
TcyN-TcyL-TcyJ M-DAP_Ext M-DAP
Name: M-DAP_Ext -> M-DAP
Description: Transport of M-DAP_Ext through a bacterial membrane, leading to the presence of M-DAP inside the cell.
Type: transport
Pathway Components: M-DAP_Ext - TcyN-TcyL-TcyJ -> M-DAP
Components:
Function Name Type
product M-DAP simple_molecule
reactant M-DAP_Ext simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
TcyN-TcyL-TcyJ djenkolate_Ext djenkolate
Name: djenkolate_Ext -> djenkolate
Description: Transport of djenkolate_Ext through a bacterial membrane, leading to the presence of djenkolate inside the cell.
Type: transport
Pathway Components: djenkolate_Ext - TcyN-TcyL-TcyJ -> djenkolate
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
product djenkolate simple_molecule
reactant djenkolate_Ext simple_molecule
TcyN-TcyL-TcyJ lanthionine_Ext lanthionine
Name: lanthionine_Ext -> lanthionine
Description: Transport of lanthionine_Ext through a bacterial membrane, leading to the presence of lanthionine inside the cell.
Type: transport
Pathway Components: lanthionine_Ext - TcyN-TcyL-TcyJ -> lanthionine
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
product lanthionine simple_molecule
reactant lanthionine_Ext simple_molecule
TcyN-TcyL-TcyJ L,L-homocystine_Ext L,L-homocystine
Name: L,L-homocystine_Ext -> L,L-homocystine
Description: Transport of L,L-homocystine_Ext through a bacterial membrane, leading to the presence of L,L-homocystine inside the cell.
Type: transport
Pathway Components: L,L-homocystine_Ext - TcyN-TcyL-TcyJ -> L,L-homocystine
Components:
Function Name Type
product L,L-homocystine simple_molecule
reactant L,L-homocystine_Ext simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
pdeH_mRNA PdeH
Name: pdeH_mRNA -> PdeH
Description: Translation of PdeH
Type: translation
Pathway Components: pdeH_mRNA -> PdeH
Components:
Function Name Type
product PdeH protein
reactant pdeH_mRNA RNA
PdeH c-di-GMP 5'pGpG
Name: c-di-GMP -> 5'pGpG
Description: Reaction transforming c-di-GMP into 5'pGpG
Type: state transition
Pathway Components: c-di-GMP - PdeH -> 5'pGpG
Components:
Function Name Type
product 5'pGpG simple_molecule
catalyzer PdeH protein
reactant c-di-GMP simple_molecule
yecR_mRNA YecR
Name: yecR_mRNA -> YecR
Description: Translation of YecR
Type: translation
Pathway Components: yecR_mRNA -> YecR
Components:
Function Name Type
product YecR protein
reactant yecR_mRNA RNA
fliDST_mRNA FliD
Name: fliDST_mRNA -> FliD
Description: Translation of FliD
Type: translation
Pathway Components: fliDST_mRNA -> FliD
Components:
Function Name Type
product FliD protein
reactant fliDST_mRNA RNA
Protein Monomers Protein complex
Name: FliC + FlhB + FlgI + FliJ + FliG + FliN + FlgG + FliP + FlhA + FliL + FlgK + FliO + FliR + FliH + FliI + FliE + FliM + FlgC + FlgL + MotA + FliD + FlgF + FlgH + MotB + FlgB + FliQ + FlgE + FliF -> FliL-FliE-FliF-FlgI-FlgG-FlgF-FlgC-FlgB-MotB-MotA-FlgH-FliG-FliM-FliN-FliJ-FliI-FliH-FliR-FliQ-FliP-FliO-FlhB-FlhA-FlgE-FlgK-FlgL-FliC-FliD
Description: Reaction transforming FliC, FlhB, FlgI, FliJ, FliG, FliN, FlgG, FliP, FlhA, FliL, FlgK, FliO, FliR, FliH, FliI, FliE, FliM, FlgC, FlgL, MotA, FliD, FlgF, FlgH, MotB, FlgB, FliQ, FlgE, FliF into FliL-FliE-FliF-FlgI-FlgG-FlgF-FlgC-FlgB-MotB-MotA-FlgH-FliG-FliM-FliN-FliJ-FliI-FliH-FliR-FliQ-FliP-FliO-FlhB-FlhA-FlgE-FlgK-FlgL-FliC-FliD
Type: state transition
Pathway Components: FliC + FlhB + FlgI + FliJ + FliG + FliN + FlgG + FliP + FlhA + FliL + FlgK + FliO + FliR + FliH + FliI + FliE + FliM + FlgC + FlgL + MotA + FliD + FlgF + FlgH + MotB + FlgB + FliQ + FlgE + FliF -> FliL-FliE-FliF-FlgI-FlgG-FlgF-FlgC-FlgB-MotB-MotA-FlgH-FliG-FliM-FliN-FliJ-FliI-FliH-FliR-FliQ-FliP-FliO-FlhB-FlhA-FlgE-FlgK-FlgL-FliC-FliD
Components: Show/Hide Components Table
fliDST_mRNA FliS
Name: fliDST_mRNA -> FliS
Description: Translation of FliS
Type: translation
Pathway Components: fliDST_mRNA -> FliS
Components:
Function Name Type
product FliS protein
reactant fliDST_mRNA RNA
fliDST_mRNA FliT
Name: fliDST_mRNA -> FliT
Description: Translation of FliT
Type: translation
Pathway Components: fliDST_mRNA -> FliT
Components:
Function Name Type
product FliT protein
reactant fliDST_mRNA RNA