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DinJ-YafQ Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
DinJ cspE mRNA cspE_mRNA YafQ dinJ-yafQ DinJ-YafQ dinJ-yafQ_mRNA mRNA fragments YafQ CspE DinJ


Gensor Unit       
Name: DinJ-YafQ
Classification:
Groups: Transcription
Defense mechanisms
Translation, ribosomal structure and biogenesis
Gene Ontology Terms (GO): biological_process GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006402 - mRNA catabolic process
GO:2000143 - negative regulation of DNA-templated transcription, initiation
GO:0060567 - negative regulation of DNA-templated transcription, termination
GO:0090305 - nucleic acid phosphodiester bond hydrolysis
GO:0006355 - regulation of transcription, DNA-templated
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cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0032993 - protein-DNA complex
molecular_function GO:0003677 - DNA binding
GO:0003723 - RNA binding
GO:0004519 - endonuclease activity
GO:0004521 - endoribonuclease activity
GO:0016892 - endoribonuclease activity, producing 3'-phosphomonoesters
GO:0016787 - hydrolase activity
GO:0004518 - nuclease activity
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Components:
  Function Name Type
  protein CspE protein
  protein DinJ protein
  protein DinJ-YafQ protein
  protein YafQ protein
  complex YafQ-DinJ complex
  gene cspE gene
  RNA cspE_mRNA RNA
  gene dinJ-yafQ gene
  RNA dinJ-yafQ_mRNA RNA
  simple_molecule mRNA simple_molecule
  simple_molecule mRNA fragments simple_molecule


Reactions       
Showing 7 reactions
DinJ-YafQ cspE cspE_mRNA
Name: cspE -> cspE_mRNA
Description: Transcription of transcription unit cspE. Reaction inhibition by DinJ-YafQ.
Type: transcription
Pathway Components: cspE - DinJ-YafQ -> cspE_mRNA
Components:
Function Name Type
inhibitor DinJ-YafQ protein
reactant cspE gene
product cspE_mRNA RNA
DinJ-YafQ dinJ-yafQ dinJ-yafQ_mRNA
Name: dinJ-yafQ -> dinJ-yafQ_mRNA
Description: Transcription of transcription unit dinJ-yafQ. Reaction inhibition by DinJ-YafQ.
Type: transcription
Pathway Components: dinJ-yafQ - DinJ-YafQ -> dinJ-yafQ_mRNA
Components:
Function Name Type
inhibitor DinJ-YafQ protein
reactant dinJ-yafQ gene
product dinJ-yafQ_mRNA RNA
dinJ-yafQ_mRNA DinJ
Name: dinJ-yafQ_mRNA -> DinJ
Description: Translation of DinJ
Type: translation
Pathway Components: dinJ-yafQ_mRNA -> DinJ
Components:
Function Name Type
product DinJ protein
reactant dinJ-yafQ_mRNA RNA
YafQ + DinJ YafQ-DinJ
Name: YafQ + DinJ -> YafQ-DinJ
Description: Reaction transforming YafQ, DinJ into YafQ-DinJ
Type: state transition
Pathway Components: YafQ + DinJ -> YafQ-DinJ
Components:
Function Name Type
reactant DinJ protein
reactant YafQ protein
product YafQ-DinJ complex
dinJ-yafQ_mRNA YafQ
Name: dinJ-yafQ_mRNA -> YafQ
Description: Translation of YafQ
Type: translation
Pathway Components: dinJ-yafQ_mRNA -> YafQ
Components:
Function Name Type
product YafQ protein
reactant dinJ-yafQ_mRNA RNA
YafQ mRNA mRNA fragments
Name: mRNA -> mRNA fragments
Description: Reaction transforming mRNA into mRNA fragments
Type: state transition
Pathway Components: mRNA - YafQ -> mRNA fragments
Components:
Function Name Type
catalyzer YafQ protein
reactant mRNA simple_molecule
product mRNA fragments simple_molecule
cspE_mRNA CspE
Name: cspE_mRNA -> CspE
Description: Translation of CspE
Type: translation
Pathway Components: cspE_mRNA -> CspE
Components:
Function Name Type
product CspE protein
reactant cspE_mRNA RNA



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