RegulonDB RegulonDB

CysB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
tcyP_mRNA lanthionine sulfide djenkolate CysP HslJ TcyJ tauABCD_mRNA sulfite SsuC taufon adenylyl-sulfate ybdN ygeH_mRNA cysJIH_mRNA lanthionine_Ext CysI cysK cysteine c-di-GMP thiosulfate TauC TauB CysD CysN succinate cbl pyruvate CysW cbl_mRNA CysA Sbp CysW SsuB YbdN cystine_Ext dehydroalanine TcyP TcyL glycoaldehyde CysK tauABCD CysP TauA CysC CysK Cbl 3',5'-ADP CysB dgcZ_mRNA aminoacetaldehyde selenate_Ext S-sulfocysteine_Ext S-sulfocysteine reduced riboflavin 3-morpholinopropanal cysK_mRNA TcyN ketoglutarate yoaC ybdN_mRNA aliphatic sulfonate selenite djenkolate_Ext SsuD CysU H2SO4 CysH CysB cysPUWAM_mRNA yoaC_mRNA taufon_Ext SsuB CysU selenate guanosine-triphosphate Sbp YciW acetylserine hslJ_mRNA butanal PAPS YoaC cysDNC_mRNA cysPUWAM yciW M-DAP SsuA oxygen cysteine_Ext tcyP ygeH CysM dgcZ RCHO H2SO4_Ext M-DAP_Ext tcyJ isethionate SsuC MOPS ammonium TauA L,L-homocystine_Ext CysJ CysJ alkanesulfonate reduced thioredoxin DgcZ flavin mononucleotide cysB_mRNA CysD CysN TcyN CysA butanesulfonate tcyJ_mRNA TcyL CysB TcyJ cysJIH sulfide CO2 thiosulfate cystine Reduced FMN cysB thioredoxin disulfide acetate selenite_Ext L,L-homocystine YgeH CysW CysE CysE CysA SsuA aliphatic sulfonate_Ext TauD ssuEADCB_mRNA acetylserine yciW_mRNA TauB CysB ssuEADCB SsuE thiosulfate_Ext CysU TauC hslJ cysDNC CysI riboflavin sulfide cysteine sulfide diphosphate PAPS acetylserine oxygen sulfite sulfite sulfite Reduced FMN oxygen


Gensor Unit       
Name: CysB
Description: Molecular biology level
Detailed: In the presence of acetylserine and absence of thiosulfate and sulphide, CysB positively regulates the expression of genes required for sulfur compound metabolic process, cysteine biosynthetic process, sulfate transport and assimilation, taurine transport and alkenesulfonate transport and catabolic process. Under these conditions, CysB is modified to CysB-acetylserine, binds its target sites, preventing its own expression but enabling the expression of its regulated genes. In the absence of acetylserine, CysB unbinds its target sites preventing the expression of its regulated genes, but enabling its own expression.
Less detailed: In the presence of acetylserine and absence of thiosulfate and sulphide, CysB positively regulates the expression of genes needed for sulfur compound metabolic process, cysteine biosynthetic process, sulfate transport and assimilation, taurine transport and alkenesulfonate transport and catabolic process

Physiology level
Detailed: The presence of acetylerine induces the expression of genes involved with sulfur compound metabolic process, cysteine biosynthetic process, sulfate transport and assimilation, taurine transport and alkenesulfonate transport and catabolic process. Under these conditions, the genes necessary for H2SO4, thiosulfate, taurine and aliphatic sulfonate transport; conversion of acetylserine to L-cysteine, conversion of adenosine 3’-5’-biphosphate to a sulfate compound, conversion of taurine to aminoacetaldehyde and conversion of alkenesulfonates to aliphatic alcohols are expressed.
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Classification:
Groups: General function prediction only
Inorganic ion transport and metabolism
Secondary metabolites biosynthesis, transport and catabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Energy production and conversion
Signal transduction mechanisms
Amino acid transport and metabolism
Coenzyme transport and metabolism
Nucleotide transport and metabolism
Gene Ontology Terms (GO): biological_process GO:0015811 - L-cystine transport
GO:0046306 - alkanesulfonate catabolic process
GO:0042918 - alkanesulfonate transport
GO:0006865 - amino acid transport
GO:0098656 - anion transmembrane transport
GO:0006820 - anion transport
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cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
GO:0060187 - cell pole
GO:0009333 - cysteine synthase complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
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molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0015419 - ABC-type sulfate transporter activity
GO:0102025 - ABC-type thiosulfate transporter activity
GO:0005524 - ATP binding
GO:0016887 - ATP hydrolysis activity
GO:0042626 - ATPase-coupled transmembrane transporter activity
GO:0003677 - DNA binding
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Components:
  Function Name Type
  simple_molecule 3',5'-ADP simple_molecule
  simple_molecule 3-morpholinopropanal simple_molecule
  simple_molecule CO2 simple_molecule
  protein Cbl protein
  protein CysA protein
  complex CysA-CysW-CysU-CysP complex
  protein CysB protein
  complex CysB-acetylserine complex
  complex CysB-sulfide complex
  complex CysB-thiosulfate complex
  protein CysC protein
  protein CysD protein
  complex CysD-CysN complex
  protein CysE protein
  complex CysE-CysK complex
  protein CysH protein
  protein CysI protein
  protein CysJ protein
  complex CysJ-CysI complex
  protein CysK protein
  protein CysM protein
  protein CysN protein
  protein CysP protein
  protein CysU protein
  protein CysW protein
  protein DgcZ protein
  simple_molecule H2SO4 simple_molecule
  simple_molecule H2SO4_Ext simple_molecule
  protein HslJ protein
  simple_molecule L,L-homocystine simple_molecule
  simple_molecule L,L-homocystine_Ext simple_molecule
  simple_molecule M-DAP simple_molecule
  simple_molecule M-DAP_Ext simple_molecule
  simple_molecule MOPS simple_molecule
  simple_molecule PAPS simple_molecule
  simple_molecule RCHO simple_molecule
  simple_molecule Reduced FMN simple_molecule
  simple_molecule S-sulfocysteine simple_molecule
  simple_molecule S-sulfocysteine_Ext simple_molecule
  protein Sbp protein
  complex Sbp-CysW-CysU-CysA complex
  protein SsuA protein
  complex SsuA-SsuC-SsuB complex
  protein SsuB protein
  protein SsuC protein
  protein SsuD protein
  protein SsuE protein
  protein TauA protein
  complex TauA-TauC-TauB complex
  protein TauB protein
  protein TauC protein
  protein TauD protein
  protein TcyJ protein
  protein TcyL protein
  protein TcyN protein
  complex TcyN-TcyL-TcyJ complex
  protein TcyP protein
  protein YbdN protein
  protein YciW protein
  protein YgeH protein
  protein YoaC protein
  simple_molecule acetate simple_molecule
  simple_molecule acetylserine simple_molecule
  simple_molecule adenylyl-sulfate simple_molecule
  simple_molecule aliphatic sulfonate simple_molecule
  simple_molecule aliphatic sulfonate_Ext simple_molecule
  simple_molecule alkanesulfonate simple_molecule
  simple_molecule aminoacetaldehyde simple_molecule
  simple_molecule ammonium simple_molecule
  simple_molecule butanal simple_molecule
  simple_molecule butanesulfonate simple_molecule
  simple_molecule c-di-GMP simple_molecule
  gene cbl gene
  RNA cbl_mRNA RNA
  gene cysB gene
  RNA cysB_mRNA RNA
  gene cysDNC gene
  RNA cysDNC_mRNA RNA
  gene cysJIH gene
  RNA cysJIH_mRNA RNA
  gene cysK gene
  RNA cysK_mRNA RNA
  gene cysPUWAM gene
  RNA cysPUWAM_mRNA RNA
  simple_molecule cysteine simple_molecule
  simple_molecule cysteine_Ext simple_molecule
  simple_molecule cystine simple_molecule
  simple_molecule cystine_Ext simple_molecule
  simple_molecule dehydroalanine simple_molecule
  gene dgcZ gene
  RNA dgcZ_mRNA RNA
  simple_molecule diphosphate simple_molecule
  simple_molecule djenkolate simple_molecule
  simple_molecule djenkolate_Ext simple_molecule
  simple_molecule flavin mononucleotide simple_molecule
  simple_molecule glycoaldehyde simple_molecule
  simple_molecule guanosine-triphosphate simple_molecule
  gene hslJ gene
  RNA hslJ_mRNA RNA
  simple_molecule isethionate simple_molecule
  simple_molecule ketoglutarate simple_molecule
  simple_molecule lanthionine simple_molecule
  simple_molecule lanthionine_Ext simple_molecule
  simple_molecule oxygen simple_molecule
  simple_molecule pyruvate simple_molecule
  simple_molecule reduced riboflavin simple_molecule
  simple_molecule reduced thioredoxin simple_molecule
  simple_molecule riboflavin simple_molecule
  simple_molecule selenate simple_molecule
  simple_molecule selenate_Ext simple_molecule
  simple_molecule selenite simple_molecule
  simple_molecule selenite_Ext simple_molecule
  gene ssuEADCB gene
  RNA ssuEADCB_mRNA RNA
  simple_molecule succinate simple_molecule
  simple_molecule sulfide simple_molecule
  simple_molecule sulfite simple_molecule
  gene tauABCD gene
  RNA tauABCD_mRNA RNA
  simple_molecule taufon simple_molecule
  simple_molecule taufon_Ext simple_molecule
  gene tcyJ gene
  RNA tcyJ_mRNA RNA
  gene tcyP gene
  RNA tcyP_mRNA RNA
  simple_molecule thioredoxin disulfide simple_molecule
  simple_molecule thiosulfate simple_molecule
  simple_molecule thiosulfate_Ext simple_molecule
  gene ybdN gene
  RNA ybdN_mRNA RNA
  gene yciW gene
  RNA yciW_mRNA RNA
  gene ygeH gene
  RNA ygeH_mRNA RNA
  gene yoaC gene
  RNA yoaC_mRNA RNA


Reactions       
Showing 87 reactions
CysB tcyJ tcyJ_mRNA
Name: tcyJ -> tcyJ_mRNA
Description: Transcription of transcription unit tcyJ. Reaction activation by CysB.
Type: transcription
Pathway Components: tcyJ - CysB -> tcyJ_mRNA
Components:
Function Name Type
activator CysB protein
reactant tcyJ gene
product tcyJ_mRNA RNA
CysB tcyP tcyP_mRNA
Name: tcyP -> tcyP_mRNA
Description: Transcription of transcription unit tcyP. Reaction activation by CysB.
Type: transcription
Pathway Components: tcyP - CysB -> tcyP_mRNA
Components:
Function Name Type
activator CysB protein
reactant tcyP gene
product tcyP_mRNA RNA
CysB cysB cysB_mRNA
Name: cysB -> cysB_mRNA
Description: Transcription of transcription unit cysB. Reaction inhibition by CysB.
Type: transcription
Pathway Components: cysB - CysB -> cysB_mRNA
Components:
Function Name Type
inhibitor CysB protein
reactant cysB gene
product cysB_mRNA RNA
acetylserine + CysB CysB-acetylserine
Name: acetylserine + CysB -> CysB-acetylserine
Description: Reaction transforming acetylserine, CysB into CysB-acetylserine
Type: state transition
Pathway Components: acetylserine + CysB -> CysB-acetylserine
Components:
Function Name Type
reactant CysB protein
product CysB-acetylserine complex
reactant acetylserine simple_molecule
CysB-acetylserine cbl cbl_mRNA
Name: cbl -> cbl_mRNA
Description: Transcription of transcription unit cbl. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: cbl - CysB-acetylserine -> cbl_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant cbl gene
product cbl_mRNA RNA
CysB-acetylserine cysDNC cysDNC_mRNA
Name: cysDNC -> cysDNC_mRNA
Description: Transcription of transcription unit cysDNC. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: cysDNC - CysB-acetylserine -> cysDNC_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant cysDNC gene
product cysDNC_mRNA RNA
CysB-acetylserine cysJIH cysJIH_mRNA
Name: cysJIH -> cysJIH_mRNA
Description: Transcription of transcription unit cysJIH. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: cysJIH - CysB-acetylserine -> cysJIH_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant cysJIH gene
product cysJIH_mRNA RNA
CysB-acetylserine cysK cysK_mRNA
Name: cysK -> cysK_mRNA
Description: Transcription of transcription unit cysK. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: cysK - CysB-acetylserine -> cysK_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant cysK gene
product cysK_mRNA RNA
CysB-acetylserine cysPUWAM cysPUWAM_mRNA
Name: cysPUWAM -> cysPUWAM_mRNA
Description: Transcription of transcription unit cysPUWAM. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: cysPUWAM - CysB-acetylserine -> cysPUWAM_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant cysPUWAM gene
product cysPUWAM_mRNA RNA
CysB-acetylserine dgcZ dgcZ_mRNA
Name: dgcZ -> dgcZ_mRNA
Description: Transcription of transcription unit dgcZ. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: dgcZ - CysB-acetylserine -> dgcZ_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant dgcZ gene
product dgcZ_mRNA RNA
CysB-acetylserine tauABCD tauABCD_mRNA
Name: tauABCD -> tauABCD_mRNA
Description: Transcription of transcription unit tauABCD. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: tauABCD - CysB-acetylserine -> tauABCD_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant tauABCD gene
product tauABCD_mRNA RNA
CysB-acetylserine ybdN ybdN_mRNA
Name: ybdN -> ybdN_mRNA
Description: Transcription of transcription unit ybdN. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: ybdN - CysB-acetylserine -> ybdN_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant ybdN gene
product ybdN_mRNA RNA
CysB-acetylserine yciW yciW_mRNA
Name: yciW -> yciW_mRNA
Description: Transcription of transcription unit yciW. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: yciW - CysB-acetylserine -> yciW_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant yciW gene
product yciW_mRNA RNA
CysB-acetylserine ygeH ygeH_mRNA
Name: ygeH -> ygeH_mRNA
Description: Transcription of transcription unit ygeH. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: ygeH - CysB-acetylserine -> ygeH_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant ygeH gene
product ygeH_mRNA RNA
CysB-acetylserine yoaC yoaC_mRNA
Name: yoaC -> yoaC_mRNA
Description: Transcription of transcription unit yoaC. Reaction activation by CysB-acetylserine.
Type: transcription
Pathway Components: yoaC - CysB-acetylserine -> yoaC_mRNA
Components:
Function Name Type
activator CysB-acetylserine complex
reactant yoaC gene
product yoaC_mRNA RNA
CysB-acetylserine hslJ hslJ_mRNA
Name: hslJ -> hslJ_mRNA
Description: Transcription of transcription unit hslJ. Reaction inhibition by CysB-acetylserine.
Type: transcription
Pathway Components: hslJ - CysB-acetylserine -> hslJ_mRNA
Components:
Function Name Type
inhibitor CysB-acetylserine complex
reactant hslJ gene
product hslJ_mRNA RNA
CysB-acetylserine ssuEADCB ssuEADCB_mRNA
Name: ssuEADCB -> ssuEADCB_mRNA
Description: Transcription of transcription unit ssuEADCB. Reaction inhibition by CysB-acetylserine.
Type: transcription
Pathway Components: ssuEADCB - CysB-acetylserine -> ssuEADCB_mRNA
Components:
Function Name Type
inhibitor CysB-acetylserine complex
reactant ssuEADCB gene
product ssuEADCB_mRNA RNA
sulfide + CysB CysB-sulfide
Name: sulfide + CysB -> CysB-sulfide
Description: Reaction transforming sulfide, CysB into CysB-sulfide
Type: state transition
Pathway Components: sulfide + CysB -> CysB-sulfide
Components:
Function Name Type
reactant CysB protein
product CysB-sulfide complex
reactant sulfide simple_molecule
thiosulfate + CysB CysB-thiosulfate
Name: thiosulfate + CysB -> CysB-thiosulfate
Description: Reaction transforming thiosulfate, CysB into CysB-thiosulfate
Type: state transition
Pathway Components: thiosulfate + CysB -> CysB-thiosulfate
Components:
Function Name Type
reactant CysB protein
product CysB-thiosulfate complex
reactant thiosulfate simple_molecule
tcyP_mRNA TcyP
Name: tcyP_mRNA -> TcyP
Description: Translation of TcyP
Type: translation
Pathway Components: tcyP_mRNA -> TcyP
Components:
Function Name Type
product TcyP protein
reactant tcyP_mRNA RNA
TcyN-TcyL-TcyJ TcyP cysteine cystine_Ext cystine
Name: cystine_Ext -> cystine
Description: Transport of cystine_Ext through a bacterial membrane, leading to the presence of cystine inside the cell.
Type: transport
Pathway Components: cystine_Ext - TcyN-TcyL-TcyJ - TcyP - cysteine -> cystine
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
catalyzer TcyP protein
inhibitor cysteine simple_molecule
product cystine simple_molecule
reactant cystine_Ext simple_molecule
TcyP S-sulfocysteine_Ext S-sulfocysteine
Name: S-sulfocysteine_Ext -> S-sulfocysteine
Description: Transport of S-sulfocysteine_Ext through a bacterial membrane, leading to the presence of S-sulfocysteine inside the cell.
Type: transport
Pathway Components: S-sulfocysteine_Ext - TcyP -> S-sulfocysteine
Components:
Function Name Type
product S-sulfocysteine simple_molecule
reactant S-sulfocysteine_Ext simple_molecule
catalyzer TcyP protein
TcyN-TcyL-TcyJ TcyP cysteine_Ext cysteine
Name: cysteine_Ext -> cysteine
Description: Transport of cysteine_Ext through a bacterial membrane, leading to the presence of cysteine inside the cell.
Type: transport
Pathway Components: cysteine_Ext - TcyN-TcyL-TcyJ - TcyP -> cysteine
Components:
Function Name Type
catalyzer TcyN-TcyL-TcyJ complex
catalyzer TcyP protein
product cysteine simple_molecule
reactant cysteine_Ext simple_molecule
TcyN-TcyL-TcyJ TcyP L,L-homocystine_Ext L,L-homocystine
Name: L,L-homocystine_Ext -> L,L-homocystine
Description: Transport of L,L-homocystine_Ext through a bacterial membrane, leading to the presence of L,L-homocystine inside the cell.
Type: transport
Pathway Components: L,L-homocystine_Ext - TcyN-TcyL-TcyJ - TcyP -> L,L-homocystine
Components:
Function Name Type
product L,L-homocystine simple_molecule
reactant L,L-homocystine_Ext simple_molecule
catalyzer TcyN-TcyL-TcyJ complex
catalyzer TcyP protein
cbl_mRNA Cbl
Name: cbl_mRNA -> Cbl
Description: Translation of Cbl
Type: translation
Pathway Components: cbl_mRNA -> Cbl
Components:
Function Name Type
product Cbl protein
reactant cbl_mRNA RNA
ybdN_mRNA YbdN
Name: ybdN_mRNA -> YbdN
Description: Translation of YbdN
Type: translation
Pathway Components: ybdN_mRNA -> YbdN
Components:
Function Name Type
product YbdN protein
reactant ybdN_mRNA RNA
tauABCD_mRNA TauA
Name: tauABCD_mRNA -> TauA
Description: Translation of TauA
Type: translation
Pathway Components: tauABCD_mRNA -> TauA
Components:
Function Name Type
product TauA protein
reactant tauABCD_mRNA RNA
TauA + TauC + TauB TauA-TauC-TauB
Name: TauA + TauC + TauB -> TauA-TauC-TauB
Description: Reaction transforming TauA, TauC, TauB into TauA-TauC-TauB
Type: state transition
Pathway Components: TauA + TauC + TauB -> TauA-TauC-TauB
Components:
Function Name Type
reactant TauA protein
product TauA-TauC-TauB complex
reactant TauB protein
reactant TauC protein
TauA-TauC-TauB taufon_Ext taufon
Name: taufon_Ext -> taufon
Description: Transport of taufon_Ext through a bacterial membrane, leading to the presence of taufon inside the cell.
Type: transport
Pathway Components: taufon_Ext - TauA-TauC-TauB -> taufon
Components:
Function Name Type
catalyzer TauA-TauC-TauB complex
product taufon simple_molecule
reactant taufon_Ext simple_molecule
tauABCD_mRNA TauB
Name: tauABCD_mRNA -> TauB
Description: Translation of TauB
Type: translation
Pathway Components: tauABCD_mRNA -> TauB
Components:
Function Name Type
product TauB protein
reactant tauABCD_mRNA RNA
tauABCD_mRNA TauC
Name: tauABCD_mRNA -> TauC
Description: Translation of TauC
Type: translation
Pathway Components: tauABCD_mRNA -> TauC
Components:
Function Name Type
product TauC protein
reactant tauABCD_mRNA RNA
tauABCD_mRNA TauD
Name: tauABCD_mRNA -> TauD
Description: Translation of TauD
Type: translation
Pathway Components: tauABCD_mRNA -> TauD
Components:
Function Name Type
product TauD protein
reactant tauABCD_mRNA RNA
TauD ketoglutarate + oxygen + taufon aminoacetaldehyde + succinate + sulfite + CO2
Name: ketoglutarate + oxygen + taufon -> aminoacetaldehyde + succinate + sulfite + CO2
Description: Reaction transforming ketoglutarate, oxygen, taufon into aminoacetaldehyde, succinate , sulfite , CO2
Type: state transition
Pathway Components: ketoglutarate + oxygen + taufon - TauD -> aminoacetaldehyde + succinate + sulfite + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer TauD protein
product aminoacetaldehyde simple_molecule
reactant ketoglutarate simple_molecule
reactant oxygen simple_molecule
product succinate simple_molecule
product sulfite simple_molecule
reactant taufon simple_molecule
ssuEADCB_mRNA SsuE
Name: ssuEADCB_mRNA -> SsuE
Description: Translation of SsuE
Type: translation
Pathway Components: ssuEADCB_mRNA -> SsuE
Components:
Function Name Type
product SsuE protein
reactant ssuEADCB_mRNA RNA
SsuE flavin mononucleotide Reduced FMN
Name: flavin mononucleotide -> Reduced FMN
Description: Reaction transforming flavin mononucleotide into Reduced FMN
Type: state transition
Pathway Components: flavin mononucleotide - SsuE -> Reduced FMN
Components:
Function Name Type
product Reduced FMN simple_molecule
catalyzer SsuE protein
reactant flavin mononucleotide simple_molecule
ssuEADCB_mRNA SsuA
Name: ssuEADCB_mRNA -> SsuA
Description: Translation of SsuA
Type: translation
Pathway Components: ssuEADCB_mRNA -> SsuA
Components:
Function Name Type
product SsuA protein
reactant ssuEADCB_mRNA RNA
SsuC + SsuA + SsuB SsuA-SsuC-SsuB
Name: SsuC + SsuA + SsuB -> SsuA-SsuC-SsuB
Description: Reaction transforming SsuC, SsuA, SsuB into SsuA-SsuC-SsuB
Type: state transition
Pathway Components: SsuC + SsuA + SsuB -> SsuA-SsuC-SsuB
Components:
Function Name Type
reactant SsuA protein
product SsuA-SsuC-SsuB complex
reactant SsuB protein
reactant SsuC protein
SsuA-SsuC-SsuB aliphatic sulfonate_Ext aliphatic sulfonate
Name: aliphatic sulfonate_Ext -> aliphatic sulfonate
Description: Transport of aliphatic sulfonate_Ext through a bacterial membrane, leading to the presence of aliphatic sulfonate inside the cell.
Type: transport
Pathway Components: aliphatic sulfonate_Ext - SsuA-SsuC-SsuB -> aliphatic sulfonate
Components:
Function Name Type
catalyzer SsuA-SsuC-SsuB complex
product aliphatic sulfonate simple_molecule
reactant aliphatic sulfonate_Ext simple_molecule
ssuEADCB_mRNA SsuD
Name: ssuEADCB_mRNA -> SsuD
Description: Translation of SsuD
Type: translation
Pathway Components: ssuEADCB_mRNA -> SsuD
Components:
Function Name Type
product SsuD protein
reactant ssuEADCB_mRNA RNA
SsuD alkanesulfonate + Reduced FMN + oxygen flavin mononucleotide + sulfite + RCHO
Name: alkanesulfonate + Reduced FMN + oxygen -> flavin mononucleotide + sulfite + RCHO
Description: Reaction transforming alkanesulfonate, Reduced FMN, oxygen into flavin mononucleotide, sulfite , RCHO
Type: state transition
Pathway Components: alkanesulfonate + Reduced FMN + oxygen - SsuD -> flavin mononucleotide + sulfite + RCHO
Components:
Function Name Type
product RCHO simple_molecule
reactant Reduced FMN simple_molecule
catalyzer SsuD protein
reactant alkanesulfonate simple_molecule
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
product sulfite simple_molecule
SsuD Reduced FMN + oxygen + MOPS Products
Name: Reduced FMN + oxygen + MOPS -> flavin mononucleotide + 3-morpholinopropanal + sulfite
Description: Reaction transforming Reduced FMN, oxygen, MOPS into flavin mononucleotide, 3-morpholinopropanal , sulfite
Type: state transition
Pathway Components: Reduced FMN + oxygen + MOPS - SsuD -> flavin mononucleotide + 3-morpholinopropanal + sulfite
Components:
Function Name Type
product 3-morpholinopropanal simple_molecule
reactant MOPS simple_molecule
reactant Reduced FMN simple_molecule
catalyzer SsuD protein
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
product sulfite simple_molecule
SsuD butanesulfonate + Reduced FMN + oxygen flavin mononucleotide + sulfite + butanal
Name: butanesulfonate + Reduced FMN + oxygen -> flavin mononucleotide + sulfite + butanal
Description: Reaction transforming butanesulfonate, Reduced FMN, oxygen into flavin mononucleotide, sulfite , butanal
Type: state transition
Pathway Components: butanesulfonate + Reduced FMN + oxygen - SsuD -> flavin mononucleotide + sulfite + butanal
Components:
Function Name Type
reactant Reduced FMN simple_molecule
catalyzer SsuD protein
product butanal simple_molecule
reactant butanesulfonate simple_molecule
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
product sulfite simple_molecule
SsuD isethionate + Reduced FMN + oxygen flavin mononucleotide + glycoaldehyde + sulfite
Name: isethionate + Reduced FMN + oxygen -> flavin mononucleotide + glycoaldehyde + sulfite
Description: Reaction transforming isethionate, Reduced FMN, oxygen into flavin mononucleotide, glycoaldehyde , sulfite
Type: state transition
Pathway Components: isethionate + Reduced FMN + oxygen - SsuD -> flavin mononucleotide + glycoaldehyde + sulfite
Components:
Function Name Type
reactant Reduced FMN simple_molecule
catalyzer SsuD protein
product flavin mononucleotide simple_molecule
product glycoaldehyde simple_molecule
reactant isethionate simple_molecule
reactant oxygen simple_molecule
product sulfite simple_molecule
ssuEADCB_mRNA SsuC
Name: ssuEADCB_mRNA -> SsuC
Description: Translation of SsuC
Type: translation
Pathway Components: ssuEADCB_mRNA -> SsuC
Components:
Function Name Type
product SsuC protein
reactant ssuEADCB_mRNA RNA
ssuEADCB_mRNA SsuB
Name: ssuEADCB_mRNA -> SsuB
Description: Translation of SsuB
Type: translation
Pathway Components: ssuEADCB_mRNA -> SsuB
Components:
Function Name Type
product SsuB protein
reactant ssuEADCB_mRNA RNA
yciW_mRNA YciW
Name: yciW_mRNA -> YciW
Description: Translation of YciW
Type: translation
Pathway Components: yciW_mRNA -> YciW
Components:
Function Name Type
product YciW protein
reactant yciW_mRNA RNA
dgcZ_mRNA DgcZ
Name: dgcZ_mRNA -> DgcZ
Description: Translation of DgcZ
Type: translation
Pathway Components: dgcZ_mRNA -> DgcZ
Components:
Function Name Type
product DgcZ protein
reactant dgcZ_mRNA RNA
DgcZ c-di-GMP guanosine-triphosphate diphosphate + c-di-GMP
Name: guanosine-triphosphate -> diphosphate + c-di-GMP
Description: Reaction transforming guanosine-triphosphate into diphosphate, c-di-GMP
Type: state transition
Pathway Components: guanosine-triphosphate - DgcZ - c-di-GMP -> diphosphate + c-di-GMP
Components:
Function Name Type
catalyzer DgcZ protein
inhibitor c-di-GMP simple_molecule
product c-di-GMP simple_molecule
product diphosphate simple_molecule
reactant guanosine-triphosphate simple_molecule
cysK_mRNA CysK
Name: cysK_mRNA -> CysK
Description: Translation of CysK
Type: translation
Pathway Components: cysK_mRNA -> CysK
Components:
Function Name Type
product CysK protein
reactant cysK_mRNA RNA
CysK CysM acetylserine + sulfide cysteine + acetate
Name: acetylserine + sulfide -> cysteine + acetate
Description: Reaction transforming acetylserine, sulfide into cysteine, acetate
Type: state transition
Pathway Components: acetylserine + sulfide - CysK - CysM -> cysteine + acetate
Components:
Function Name Type
catalyzer CysK protein
catalyzer CysM protein
product acetate simple_molecule
reactant acetylserine simple_molecule
product cysteine simple_molecule
reactant sulfide simple_molecule
CysK CysM cysteine pyruvate + ammonium + sulfide
Name: cysteine -> pyruvate + ammonium + sulfide
Description: Reaction transforming cysteine into pyruvate, ammonium , sulfide
Type: state transition
Pathway Components: cysteine - CysK - CysM -> pyruvate + ammonium + sulfide
Components:
Function Name Type
catalyzer CysK protein
catalyzer CysM protein
product ammonium simple_molecule
reactant cysteine simple_molecule
product pyruvate simple_molecule
product sulfide simple_molecule
CysK CysM cysteine dehydroalanine + sulfide
Name: cysteine -> dehydroalanine + sulfide
Description: Reaction transforming cysteine into dehydroalanine, sulfide
Type: state transition
Pathway Components: cysteine - CysK - CysM -> dehydroalanine + sulfide
Components:
Function Name Type
catalyzer CysK protein
catalyzer CysM protein
reactant cysteine simple_molecule
product dehydroalanine simple_molecule
product sulfide simple_molecule
CysE + CysK CysE-CysK
Name: CysE + CysK -> CysE-CysK
Description: Reaction transforming CysE, CysK into CysE-CysK
Type: state transition
Pathway Components: CysE + CysK -> CysE-CysK
Components:
Function Name Type
reactant CysE protein
product CysE-CysK complex
reactant CysK protein
cysPUWAM_mRNA CysP
Name: cysPUWAM_mRNA -> CysP
Description: Translation of CysP
Type: translation
Pathway Components: cysPUWAM_mRNA -> CysP
Components:
Function Name Type
product CysP protein
reactant cysPUWAM_mRNA RNA
CysW + CysP + CysU + CysA CysA-CysW-CysU-CysP
Name: CysW + CysP + CysU + CysA -> CysA-CysW-CysU-CysP
Description: Reaction transforming CysW, CysP, CysU, CysA into CysA-CysW-CysU-CysP
Type: state transition
Pathway Components: CysW + CysP + CysU + CysA -> CysA-CysW-CysU-CysP
Components:
Function Name Type
reactant CysA protein
product CysA-CysW-CysU-CysP complex
reactant CysP protein
reactant CysU protein
reactant CysW protein
CysA-CysW-CysU-CysP Sbp-CysW-CysU-CysA